Clat049397.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453319.1:8122980-8124767[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-12 3.3e-09 38.1 0.0 3 38 17 53 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCGCGGAGTTATAAAAGAACAACTAACCAACAAAGCTGGGACTCGGAATCAATGAAAAAGGCTGTACAAAGTGTTATTAAAGGAGAAATGGGATATCTAAAGGCCTCGATAACATACGGTGTTCCCAAGACTACTTTACAAGATCGTGTAAATAAATTCAGAAGTTCTGGGGATATGGTTGTTTCTACAAGCAAAGGCCTAGGGCGCTTCAAACCAGTATTCTCCCCATCTCAAGAGGAAAGCTTATTTAATTACTTGATAGATATGGAAAGCCGTCTTTTTGGACTGTCTTATAAAGATTTACGTCGTCTAGCGTTTCAGTTTGCTGAgtttaataatattacaaacaatttcaataaaacttctAAACTGGCTGGTGAAGACTGGCTAGCAGGTTTTATGAAACGCCATCCAAGATTATCACTGAGGGCAGCGGAGCCTACGTCTGTTGCAAGAGCGATGGGTTTTAATCAGATTAGTGTGAATAAGTTCTATGATCTGCTAGAATCGTTGATAGACAAACACCAATTTCCACCAACGAAAATATATAATGTAGACGAGACGGGGATAACAACAGTTCCTAAAAAACAAAGTAAAGTCATTGCATTGAAGGGTAGAAAGCAGGTGGGCCAAGCAAGTTCAGCAGAAAGGGGCCAGCTTACCActgctgttatttgtgtttctGCTTCTGGACATTATGTGCCACCTTTAATGATATTTCCTAGAGTTCGTATGAAAGCAGAACTTCTCGATGGCGCTCCTCCTGGGACGATATCAGTGTGCCATCCAAGTGGCTGGATACAGAGCGAAATTTTTGTAGAATGGCTTAATCATTTCATAACAGCTGTTAAACCCAAAAAAGACGATCCAGTTCTGCTGGTACTGGATGGACATAAAACTCACACACAGAACCTGCCTTTGATTGAAAAGGCTAGACAAAACGGAGTGATAATTTTGTGCTTCCCCCCTCACTGCACCCATAGATTGCAGCCTTTGGATGTTAGTTTTATGGGTCCACTGAGTACATTTTATTCCCAAGAAGTTAATCAATGGCTTAGAAACAATCCAGGCAGAGTTGTCACGCAGTTTCAAATATCGAAGCTCTTTGGACTTGCTTATTGTAAAGCGGCAACAATGCAAAACGCAATGTCTGGTTTTAATAAAACAGGAATATATCCCACTGACAGGACTGTGTTTAGTGAATCAGATTTTGTTGCTGCTCAAACGACAGATATAAATGTCTCAGCTGTAACTACCACCGTACAACAAGTTTCTCCTCCTCCGTCTATCAACATAGCTTCACTCGTAAATGTTCCACTAAACAATGAAATAAGCACGCCTTCTACTTCCATTGCTTGCGAAGTTCCTTGCGGATCTACTCCGCCAAAAGAGGCACAACAATGTAAAATATTCGTAACACCGGCTGATATCATTCCTATACCTAGAATAAACAGTGAAAAAAGAAGACAAACCAATCATCGTAAAGGTAAAACAGCAGTAGTCACATCTTCTCCTTATAAAGAAGAATTAATTGCCCTGGACAAGAAAAAGAAACCAATCTTCAATTTGAATAAATCACCTAAGCAATCAAAACCGAGAACTTCGTGcactaaaaataatgaaaatatttgtttatattGCCAAGAAGAATATGGCGTCAGTCGAATGGATGAAGGGTGGGTGCAGTGCATTACTTGTAAAGGATGGGCACATGAAGGCTGTACTGGCTGGGATGAAGATGACATGGATTGTTTCGAATGTTTTGGTTGCTTGGCTTCACGTTGA
- Protein Sequence
- MPRSYKRTTNQQSWDSESMKKAVQSVIKGEMGYLKASITYGVPKTTLQDRVNKFRSSGDMVVSTSKGLGRFKPVFSPSQEESLFNYLIDMESRLFGLSYKDLRRLAFQFAEFNNITNNFNKTSKLAGEDWLAGFMKRHPRLSLRAAEPTSVARAMGFNQISVNKFYDLLESLIDKHQFPPTKIYNVDETGITTVPKKQSKVIALKGRKQVGQASSAERGQLTTAVICVSASGHYVPPLMIFPRVRMKAELLDGAPPGTISVCHPSGWIQSEIFVEWLNHFITAVKPKKDDPVLLVLDGHKTHTQNLPLIEKARQNGVIILCFPPHCTHRLQPLDVSFMGPLSTFYSQEVNQWLRNNPGRVVTQFQISKLFGLAYCKAATMQNAMSGFNKTGIYPTDRTVFSESDFVAAQTTDINVSAVTTTVQQVSPPPSINIASLVNVPLNNEISTPSTSIACEVPCGSTPPKEAQQCKIFVTPADIIPIPRINSEKRRQTNHRKGKTAVVTSSPYKEELIALDKKKKPIFNLNKSPKQSKPRTSCTKNNENICLYCQEEYGVSRMDEGWVQCITCKGWAHEGCTGWDEDDMDCFECFGCLASR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382501; iTF_00208783; iTF_00208782; iTF_00208784; iTF_00208785; iTF_00208786;
- 90% Identity
- iTF_00382501; iTF_00208782; iTF_00208783; iTF_00208784; iTF_00208785; iTF_00208786;
- 80% Identity
- -