Clat012508.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453300.1:15240562-15241263[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-12 1.8e-09 39.0 0.0 1 38 17 53 17 60 0.88 2 2 9.4 9.2e+03 -1.7 0.1 14 22 140 148 135 148 0.73
Sequence Information
- Coding Sequence
- ATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGGGAATGGACTGAAAGTGCGTTAATTGAGGCTTTTCAAGCTGTTTCTAATGGAATGGGTATCAATGAAGCGGCAAAAACATTTGGGATACCAAAAACTACATTTAAACGAAGactagcaaaaaataacttgacTAAAAGCGACGTTCTCGGTCCGAGTGGCATACTGCAGCCTGAAAATGAGAAGAAGATTGTGacgcacataaaaaaattacagaaaagTGGGTTTACGCCATCAAGAGAGACAGTGCGTAAAATGGCGTATAATTTAGCGGAAAGACTGCAAATTAAACATAACTTTAACCAAGAAAAGAAAATGGCTGGAAATTGGTGGTTGAAAAGCTTTCTTAGACGAAACATTGAACTTTCAATCCGGCAATCGGAAGGTGTCTCTGTGGCCAGGGCTAAGGGAATGAATAAAGAATATGTtgatttcaaccttttagaagAAGTTTTGAAAGAAAATGAACTTTTTGACAAACCTGGCTCTATTTTTAATATGGACGAAACAGGTTTGCAGTTAAATAATAAGCCGGGGAAAGTAGTTGCCGGGTCCTTACTGGGTGGTCCGACTCACCCGCATAGTATGGGAGAGATGGACCGAGGGTCTTTTCTTAAAAATTTCAATTGTTACCATAATGaagctatgatcgtgccatattAG
- Protein Sequence
- MPLTYKRKSGVCRGEWTESALIEAFQAVSNGMGINEAAKTFGIPKTTFKRRLAKNNLTKSDVLGPSGILQPENEKKIVTHIKKLQKSGFTPSRETVRKMAYNLAERLQIKHNFNQEKKMAGNWWLKSFLRRNIELSIRQSEGVSVARAKGMNKEYVDFNLLEEVLKENELFDKPGSIFNMDETGLQLNNKPGKVVAGSLLGGPTHPHSMGEMDRGSFLKNFNCYHNEAMIVPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -