Clat029756.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453308.1:30216339-30239072[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 1.5e-07 32.8 0.0 4 39 248 284 245 288 0.90 2 4 1.1e-10 1e-07 33.3 0.3 2 39 300 337 299 340 0.92 3 4 1.3e-14 1.3e-11 45.8 0.0 2 45 355 399 354 399 0.96 4 4 2.6e-17 2.5e-14 54.5 0.0 1 41 406 447 406 450 0.92
Sequence Information
- Coding Sequence
- ATGCCGGGGCGCGGCGCGACGGTCAAGTGCGAGCCGCCGTCCGACGGAGAGGACGACTCACAGTACTCGCATCACTATTTCACCAATCAGACAGGTCTGGAGGAGCtggcgccgcccgcgccggcgGGCCCCGCAGCCACGCCGGTGTGCGTCAAGCAGGAACCGGCGGAGGCGCCGGCGCTCACGCTCGAGAACCTCGAGCCCGCACACAACAGCAAATGCACGGAGCGGGCGGAGGCGCCGGCGATCACGCTCGAGAACCTCGAGCCCGCGCACAACAGCAAATGCACGGTGAGTGAATGGACGTCAACAGACTGGGCTGGAAAAGCTGGCGACGTTAGGCCCCACAGCCACGCCCCAGTGTGCGTCAAGCAGGAGGCACCCCGGGGCGGCGCGGTGGGTCCCTCGCTGGAAGTGTTACGTCGTAGCACTTTCAGCGAAGGACCTTCTACGATTAACGGAGATGGCTCTCTGTTTCTCAGCAGGGCCTTAAGGATATATGCACTTCAGACTTTTACTAAGTCCTTTTTGCTGCAGGGCTCAACATTGCTGGATAGACATCTTGCGATGCTCAACTCCACCGAAGTGCCTGACTCATCAGACTTTATGCCCCTGATGGCCAAAGATGAACCGTTGTCTGAGGGAGAACAACACCAGTTTAGCGGCGACGACACGAGTGACTCCTGCGGGCAGAATGAGGCGGTGCACACAAGAAGTAGTCCTAAGAGCTGGACCCAGAGGGACATGGACAACGCCTTAGAAGCCTTAAGGAAGCACAATATGAGCCTTACCAAGGCGTCAGCGACATACGGTATTCCGTCCACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGCCTCCAAGTCCTGGAGCGAGGCCGATCTAAGGGGCGCCCTGCACGCGCTCAGAGCTGGCGCTATATCCGCCAACAAGGCTAGCAAAGCGTATGGTATCCCGAGCAGCACGCTATACAAGATCGCCCGGCGCGAGGGCATCCGACTAGCCGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCTCCATACGGTGCGGCGCCTGCAGCGTGCAGCGCGCCGCCACGCAGTACGGGATACCCACCGGTACACTTTATGGCAGGTGTAAGCGAGAAGGCATTGAGCTGTCTAGATCTAACCCCACACCGTGGTCTGAAGATGCGATGGGGGAAGCGCTGGAAGCTGTTAGGGTGGGTCAGATGTCCATAAACCAAGCCGCTATCCATTACAACCTGCCTTACTCGTCACTCTACGGCCGCTTCAAGAGATGCAAACACCAAGTTCAGGGTCAACCATTACATCCAGACATCCAAAAGGCAATGGACGTGGATCCCCAGACGCAGCACCAAGAGATGCAATACTACCAGCAGCCCTTACCCGTCGAGTCCAGCTCTCAACAACCCGACCTCCTCAACTTGCAGTACCCTTACTTGCACCAAGTGCATATGAGCGAGCAGGACAGCATGCTGCAAGACCACTACGGGCAGTACTTCGGCTGCAGCAGCATCATGACCAGTTGA
- Protein Sequence
- MPGRGATVKCEPPSDGEDDSQYSHHYFTNQTGLEELAPPAPAGPAATPVCVKQEPAEAPALTLENLEPAHNSKCTERAEAPAITLENLEPAHNSKCTVSEWTSTDWAGKAGDVRPHSHAPVCVKQEAPRGGAVGPSLEVLRRSTFSEGPSTINGDGSLFLSRALRIYALQTFTKSFLLQGSTLLDRHLAMLNSTEVPDSSDFMPLMAKDEPLSEGEQHQFSGDDTSDSCGQNEAVHTRSSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGACSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKHQVQGQPLHPDIQKAMDVDPQTQHQEMQYYQQPLPVESSSQQPDLLNLQYPYLHQVHMSEQDSMLQDHYGQYFGCSSIMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -