Cses013173.1
Basic Information
- Insect
- Cotesia sesamiae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:2134-7324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.6 4.6e+02 1.6 0.1 2 17 51 66 50 67 0.90 2 22 0.0062 0.62 10.6 3.3 2 23 222 244 222 244 0.97 3 22 0.027 2.7 8.6 1.8 1 23 308 330 308 330 0.97 4 22 0.028 2.8 8.6 0.2 1 23 379 401 379 401 0.98 5 22 0.0055 0.55 10.8 0.4 1 20 455 474 455 476 0.95 6 22 0.18 18 6.0 1.2 1 23 488 511 488 511 0.86 7 22 0.13 13 6.5 2.1 2 23 517 538 516 538 0.96 8 22 0.0024 0.24 11.9 0.1 3 23 563 583 561 583 0.97 9 22 7.4e-05 0.0074 16.7 0.4 1 23 589 612 589 612 0.96 10 22 2.2e-07 2.2e-05 24.6 0.2 2 23 650 672 649 672 0.96 11 22 0.0014 0.14 12.7 0.4 1 23 678 701 678 701 0.89 12 22 2.9e-05 0.0029 18.0 4.5 1 23 706 729 706 729 0.97 13 22 0.0007 0.07 13.6 0.5 3 23 738 758 736 758 0.92 14 22 0.02 2 9.0 0.6 2 20 811 829 810 829 0.95 15 22 0.025 2.5 8.7 0.1 2 23 850 871 849 871 0.96 16 22 0.00023 0.023 15.1 0.5 2 23 888 909 887 909 0.96 17 22 0.00079 0.079 13.5 0.1 1 23 929 952 929 952 0.90 18 22 0.056 5.6 7.6 0.3 2 23 1019 1041 1018 1041 0.95 19 22 9.5e-06 0.00095 19.5 0.4 2 23 1074 1096 1073 1096 0.95 20 22 3.5 3.5e+02 2.0 0.6 1 23 1102 1126 1102 1126 0.90 21 22 0.64 64 4.3 0.6 1 23 1131 1154 1131 1154 0.96 22 22 0.11 11 6.7 0.0 2 23 1184 1206 1184 1206 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGATGTGGTCGAGCTGAATAACGTTGAAAATCTCTGCAGACTATGTCTATCATCAGACGACCCCAAGTCTCCGATATTCGGGCTCCAGGAGTCGTCGGTCCCGCTGGCGGATAAAATTCAAGCATGTTTATCAATCGAGCTGATTTGCCTTAAGTGTCTCAAAAGCGTTAATCAGTGGCATAATTACAAGGAATCATGTCTCAAGTCCCAGGAAAAGCTGCAAATGTGGCTTGTCAAGCAAGCAGAAGTTACTGTTGCTATGCCAGCAATAAAGAACGAGCCCCTGGACATAGAAATATACGAAGACAATATCGAGATCGTTGAAATGTCCGAAGATGAATTGAACCACGAACTACCAAATGATAAGATTAATCCATCGGAAATTGCCACCCGTGGGAGCCACCGGATAGACATTAGTTTACACAACAACGCAGGAGAACCAACCGACGACGAGGAGGACCTGGATTGTAACATTGACGTGGAATCAATAAACGAGAACGAGACCGAGAGTGAACTGTTACTGAACCCAATGGCCCTGGGCGCGAACAAGAACATGGAACCGGACTCTACCCAGAAATTCAATGTCCGCGCAGTCAGGAAAAAAGTACGGCGTGGTCCCCACACCCACTTCCGCGGTCAAAGAACCTTCAAGCGTCGTTGTCCTGACTGCCAGCACGTTCTCCACTCAAAATCCTCGTACGCCCGGCATATAAACCGGTACCATCGCGATGGACCGACAGTAGAGCTCTCTAATTCTATCCCGAACTCCCAGCACAATGGGGCCCCCTACCCGAACGAAGACGTGCAGTCAGCAACTGAAGAAATCGAGGACGTCGAAGACGAACTGGTCAGTCTTGAAAAAGACGCTCCTCTGACCCAGGTCCAGGAATCTATTATCAGCCAGCTAAAGACCTTTTCCTGCTACGCCTGTCAGCAGTCCTTCAACGACCGTCGCAGCACTCTAAATCACATCCGCCAGCACATGCCCGACCTAAGACCCTACACTTGCATCGCCTGTCTCACCGAGTTCCCCGATCGTTCCATCTACAAGCTCCACTGCGGCGCTTCCTTCGAATGTGCCATGAAGATCGCCCTGGTGGTTCCCAAGCACGGAACAGAGAAGTACTTCACTTGCAACATGTGCTTGAGACCTATGCCGAACCGCAAGGAGCTGATTGCTCACTTGTCCAAGCACTCGGATCGTCAGTACGAGCAGTTGACCGCACCAGGTAAGAAACCTCCCAGGTTGAAGCCAGTCAGCTCCAGTTCTGCTGGTCAACTTCCAGCAAAGTCTACTTCTAGCGCTGTTTCTACCACTATTGGACCCTACCGTAACGGGGACCCAGCTCACAACCACACCTGCGATTTCTGTGGGATGATTTACCGCTACAAGCCAAATATGATAAAGCACCAGGACCTTTGCAAGCGATTGCCTCCAGAGGAACGAACTTCCTACCGTTGCGTTCACTGCGGTATGACTTTCTTAGTTTTCAAGAAGTTCCAGTCTCATATTGCTGCGGAACACAACAAGAAAGAGCTGATTTGCTTCGTTTGTAACAGTAAATTTCGATACGCGAATGAGTTCTTGATTCACCATCAAAAGCATCGCATGATAAACAAAACCGCAGAGACCCACGCGATGAACCACTGGAACAAAACTGTTACCATGAAGTACGGCTGCGCTGTTTGTCCAGAGCAGTTTGATACTAAAGCTCAGTTGGCCGATCATCGCACGACTCATTTGAAGGTTAAGATCTTCTCTTGTAGCATTTGCCGAAGAATGTTTGGAAATTCCCAGGCGCTTAAGGAACACATGAATGAGGATCATTCTCCGGAATTGGACCCTAATATTTCGGCGTTGGACTTCCTGGACCAGAGTAATGAACTTCCGAACACCAGTAACTGGTCGGTTAACACAGATCCAGGGACTCGAAGTACTGAGTGCACTGTTTGCGGAAAAGTATTCGCGAATTACCCAAATCTCCGGAGACACATCAGATCAGTTCATGCTGGGGATGATAGATTCAACTGTTCCAAGTGTTCCAAGACGTTTACCAGCGAACCGGAACTTGCTGAACACAATGAGAACGTGCATACTGAGGCTACCCATCGTTGCAAATTTTGCAAAAAAAAGTTCTCCAATAATCGTGCTCTGGAGTCACATCAGCAGACCGCTCATGGTGTTAATGATATTAATTTAGCTTGTGATATTTGTGGCAAGCAATTTGGAAATGAAACTTCGTTGAAAATTCATCGAGGACACCATTTCCGGCGCGACTCAAGGCTCAGTATTCGGAACATGCCGCATCCCATGGACCAGGTTCAGGTTGAGATTAACGAATCAGTGGAGATAGTGTCACCTAGATCTGGTCGGAAGAAATCTACTCACAGAAGGTCATCTTCACCGAAGGCTTCGGAATTAAAGTGTCAAGTTTGCGATGACAAATTCTCGGATGTTCATGATTTGCGGAAGCATTTGTGGGATGTTCATTGCGCGAAGAACAAATCTGAGAAATCTTTTATGGAAGAAAATTCACTGCAGTGCGAACTTTGTACCAACGTTTTGCCGGATGAAAAGAGCCTAGAGGACCACATGAAGTGGCACAAAAACAATCCTATTTTGTCAGATGGATTGCCGAGGGCTGTAGATATTTCTTGCGATGTTTGTGGAAAGTTTTACAGCTCGATGAAAGCGCTGTGGAAGCACAAAAAGCTGCACAGCAAAACTGGAGTTACTATGAAGTTTTCTTCGGTTAAAAAAGCTGCGCTTTCTCAGTTCCCCTGTCCAGTTTGCAGGAAAGTATTTGGGAATGAAACTTCTATGAAGAAACACAAAGCCGCTGCGCATTATGCGCGACGCACTATTGCTGCGCCTATTGTTACGACAAAGGTGGCGCGGAAGTCGATTAATGAAGGCGAGGTTAAACCCAAGAGACCTAAATTAGATTTTGATATTATTCGCAAGGCTTACAATCTCGAGCCGAGTAGTTACGCCGCTGGAGGAAGTAATAGTAATAATAATAGTAATAGTAATAAGAAACCGGTTACTTGTGGAATTTGCAAAAAATTATTACCAAGCATGAGCTCGCTGTACAAACACCGGCAAAATGTTCATAAAAATTTTGACAAATCGTTGGAGAACAACGAAGATAACAACGGGAACGAGTCGAGTTTTAGGAACGAGGAAGAAAATCCCGGAAAATCTCGGGTTCCTTGCACCGAGTGTGACAAGGAATTTTCTACCCTGTCGAACATGAAGCAGCATTTGACCAAGGTTCACGGTAATGGGAATAAATATCATTGCAGCGCTGACGGGTGCAATCAGTACTTCAACTCTCCTTTGGCTAAACAGTTACATGAAAAAGCCCACATGAATGTTCTCTACAGGTGCGTTATCTGTGCGCGTCATATGTTCCAGCGCAGTGCGATGATTCAGCACCTTGCTACTGAGCATAAAGGTCAATACTCGTCTAGTGTTGAAAAAAGCCTTTACAAAAAAACTGACTTAAGCAATTACCAAGTTCACGGAGCTGAAGGACGTGTATGTCCAGTTTGTAATGTTACTTATCCTAATATTAAAGCCATGAAGATTCACTACGTTAAAATTCATGAAAATAGTTAA
- Protein Sequence
- MDDDVVELNNVENLCRLCLSSDDPKSPIFGLQESSVPLADKIQACLSIELICLKCLKSVNQWHNYKESCLKSQEKLQMWLVKQAEVTVAMPAIKNEPLDIEIYEDNIEIVEMSEDELNHELPNDKINPSEIATRGSHRIDISLHNNAGEPTDDEEDLDCNIDVESINENETESELLLNPMALGANKNMEPDSTQKFNVRAVRKKVRRGPHTHFRGQRTFKRRCPDCQHVLHSKSSYARHINRYHRDGPTVELSNSIPNSQHNGAPYPNEDVQSATEEIEDVEDELVSLEKDAPLTQVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELIAHLSKHSDRQYEQLTAPGKKPPRLKPVSSSSAGQLPAKSTSSAVSTTIGPYRNGDPAHNHTCDFCGMIYRYKPNMIKHQDLCKRLPPEERTSYRCVHCGMTFLVFKKFQSHIAAEHNKKELICFVCNSKFRYANEFLIHHQKHRMINKTAETHAMNHWNKTVTMKYGCAVCPEQFDTKAQLADHRTTHLKVKIFSCSICRRMFGNSQALKEHMNEDHSPELDPNISALDFLDQSNELPNTSNWSVNTDPGTRSTECTVCGKVFANYPNLRRHIRSVHAGDDRFNCSKCSKTFTSEPELAEHNENVHTEATHRCKFCKKKFSNNRALESHQQTAHGVNDINLACDICGKQFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINESVEIVSPRSGRKKSTHRRSSSPKASELKCQVCDDKFSDVHDLRKHLWDVHCAKNKSEKSFMEENSLQCELCTNVLPDEKSLEDHMKWHKNNPILSDGLPRAVDISCDVCGKFYSSMKALWKHKKLHSKTGVTMKFSSVKKAALSQFPCPVCRKVFGNETSMKKHKAAAHYARRTIAAPIVTTKVARKSINEGEVKPKRPKLDFDIIRKAYNLEPSSYAAGGSNSNNNSNSNKKPVTCGICKKLLPSMSSLYKHRQNVHKNFDKSLENNEDNNGNESSFRNEEENPGKSRVPCTECDKEFSTLSNMKQHLTKVHGNGNKYHCSADGCNQYFNSPLAKQLHEKAHMNVLYRCVICARHMFQRSAMIQHLATEHKGQYSSSVEKSLYKKTDLSNYQVHGAEGRVCPVCNVTYPNIKAMKIHYVKIHENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380546;
- 90% Identity
- iTF_00378214;
- 80% Identity
- -