Cses017243.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia sesamiae
Gene Symbol
-
Assembly
None
Location
scaffold:30912-36687[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.011 1.1 9.8 0.4 1 23 219 241 219 241 0.98
2 16 0.00039 0.039 14.4 0.1 1 23 246 268 246 268 0.98
3 16 7.8e-05 0.0078 16.6 1.2 1 23 356 378 356 378 0.96
4 16 8e-05 0.008 16.6 0.4 3 23 384 405 382 405 0.94
5 16 4.9e-05 0.0049 17.3 1.8 1 23 757 779 757 779 0.98
6 16 4e-05 0.004 17.5 1.4 1 23 783 805 783 805 0.98
7 16 0.0032 0.32 11.5 5.8 1 23 810 832 810 832 0.96
8 16 0.00033 0.033 14.7 4.4 1 23 885 907 885 907 0.97
9 16 7.7e-05 0.0077 16.6 2.2 1 23 912 934 912 934 0.97
10 16 0.00013 0.013 15.9 2.2 1 23 989 1011 989 1011 0.98
11 16 0.00018 0.018 15.5 1.0 2 23 1019 1040 1018 1040 0.97
12 16 1.3e-06 0.00013 22.2 2.1 1 23 1051 1073 1051 1073 0.96
13 16 0.00047 0.046 14.2 1.3 1 23 1079 1101 1079 1101 0.97
14 16 0.00021 0.021 15.2 0.7 1 23 1107 1129 1107 1129 0.98
15 16 6.4e-06 0.00064 20.0 2.0 1 23 1135 1157 1135 1157 0.96
16 16 0.00011 0.011 16.1 0.3 1 22 1163 1184 1163 1184 0.96

Sequence Information

Coding Sequence
ATGGAATATAAAGTGTCAAACTTACTAGTGAATATTGATAATATTTGTCGTGTATGTTTGACTGAAAATGCTAATTCACTGTCAATATTCTGTCAAAATGAAACAGATGAAAAATATCGCGATCTTTTAAATAAAATTCAAGAGTCCGGTGGTATTAAAATCACCGAAGATGATGGTTTACCGACACTTATTTGCTCTAAATGTATTAATAATATCAACCTTGCATTTAAAATTCGTCAGCAATGTCAACGTAGTGATACACTGTTAAGATTATATTATAAAAAATTAAAAGAGTCTAACCTCAAAACTATACATTATCAAGAAATTCTCCAACCAGAGTTAATTACACCAGATATTTCACAATCCAGCCAAGATCTGTTTAACTACTTAGAAATCCAGAGTATGGACGTCGAAGAAGTTGTTGTTGGTCAAGAAGAGGTCCCAAGTGTTGAGAGTGCTGGAATGACTGACGACGAACCACCGTCTTACAAGTTAAAATTGCAATTACTTGAAATTGGCAGTACAACGAGCAGTTCACCGATTACAAACTCGCCAAACTCGCGTACAAAAGCTCAGAATAAAGTATATCCCGAGCACCTAGGAGCTTTTGAGAATTTAGCTTTTGATCCGCTTCAGTTGCCGAGTGATAAAAAATATACATGTTCAATCTGCGCTCAGGCGTTCGAGACGTTAAAAATATTAAGACAGCACCGAAAAATTCACAAAGATGAGTTATATGTTTGTAAAATCTGTCCTGTGCGTTGCGCTAAGGCTGACGAGCTGGCAATTCACTTGAAATCGCATCAACTAACCCAAGCAGCAGTCGCAACTATTCAAGTAAACAATTATGACAATTCCAAAGACTGCAATGACTCCGATGTGGTCAACGATCAGCAAAAAATTGATCATTGCAACGAGCAACTACTCCGTGACAAGTCACCCGACCTTAACGACTATACTACTTACCGTGTTAAAAAGTCTACGATCAAAGGATTATCCCCTGATAATATTAATACAAATAATAATATCAATAGTAATATTAACGATACTAATAGTCCTATCATTCATAAGTGTGAGATTTGTGGGCAAATATTTTCAAAAGAAAAAGGACTGATGCGGCACCGAGCTTATCACGAATCACGAGTTATTTGTGATATTTGTGGTAAGGTATGCTCTAATCAAAATTGGCTAGAGTCTCATAAAAAATTAGCTCACAGTGGTAAAATAGATATTTTAATAAAAAATATCATAATGACCGAGTGCTACCTGGATTTCGATAGAGTTTGTAGAATATGTTTAACAGAATCAACAAATTTAACATCATTGTATTGTAATGATTCGGTACCAGGTGTTTTTCCAAGTTTATCACAGCGTATATCAACATGTGGGGCTATTGAGCTTAATGAAAGAGACGGATTGCCATCGTTAATTTGTGAGAATTGTATTTATAAAGCAAGTGTTGCTCATGATTTTCGTGAACAGTGTCAGAATTCAGATGCACGATTACGTTTGTGTTACGATAAACCAGCTCGTCTACAATTAAGTTTGCAGGACTCCAGTACGCAAACAGAAGTTGAAGAGAGAACGATGGCTAAAAATGTAAATTCAAATTATTTTGTAAAACAAGAAATTCAAGGGTTCAATCAAGATTTAAATACAATAGGTGTTTACCAAAATCCCCAAGTTGAAGTTACAAACAATCAAATAGTTTCTGACGATAAACTATTCCTATGTAATATTGGCTACCAAACGAAAGAATTAGAAAAACAGCCAGTTCTTGAATCGACTCAGCATCAAAATCAGCAGCACCAACACCAACACCAACTCCAACATCAACATCAACATCAAGAACTCGATCATCAAGATATTCAACATCAAGTATTAATACCAGAGCAGCAACAAGTTTCTATAGCTGTCGCTATTGAAACAGAGCAACAATTACCAAATTCTGTTACAATAGCTGAAATGAAACCAACGGTTACACAATACGTGGACAACGATTTGTTGGTTAATAACGATGACAGTGTTGAAGACGAAGATCTTGAGGATGAAGAAGAAGAAACTGAAATTCCAGCTGACGGATTTAACAAAGAGCAAGACATTTCAATTGATTTACACGAACATAAGTGGGAAGAAGAATCAGAGGAATTAGTGCCTAGCAAAAGATTGACGCGCAAGGCTAAGGATATTGCCGGTAAATCATACAGCGTTGATGAAATTGATGAAGATTTACCTGATAATAACGATGACGACGACGATGAGCCAAAATTCAAGTGTAAAGTTTGTTCGAAACGATACAACACATCGAAAGGCTTGAAAAATCATGCCCAAGTTCATGATAAAAAACACAAATGCCCCGTGTGTTTAAAGTCGTTCTACAACCTTGAGAATATGGAAAAACATGTTAAAATTCATGAATCTAAGCCTCATGCGTGTCAACTGTGTCATACATGTTTTGCTAAGCCGCAGACCTTGGTTCGGCATCTCAAGAGTCATTCGGATAAAATTCAGGGTAGCAATAATAATAGTATAAAGAGCAATGAAAACGGAACAATAACGATCGTAAGAACTGAAGATACTGAGGACGACGATGACGATCGTGACGGTTTTCAGACAAATGAAACCGATGAATTCGACAGTGCGCCTGGTCTGTACAAGTGCAGTGAATGCAATCAGTTTTGTTCGACATTGAAGAATCTCAAAAGACATTCATTGATTCACGGTGATAAAAAATATTCCTGTACGGTTTGTAAAAAATATTTCTTCCGACCAGATACGCTGAAGAAACATGCTGAAAAACATGGTCACGGTTTACTGGACAATTTGTCAGACGAGAACAAATTGTATGAGTCCGACGATGAAACATTCAATCGCAGTAATACGCTGGCTAATAATATCAACGGCAATGGGACCAATGATACTGATAATAAAAAGGTTGACAGTGATGAAGACGGTTCTGGGGAGTACAAGTGTCAGCATTGCGACAAAGTTATGGCAACTAAAAAAGGATTAAGACGGCATGTGTCGATGCATAAGCCAAAAGCAGAGCCAGTAACCTGTGAAATTTGTAAAAAAGTGTGTGCTAGTCAAGCTAGACTGGTTCTTCATCAAAGAACACACAATAAACCTAAGGAAAAAGTACCGCGGGAATATCTCTGTCATATATGCAGTAAAGTATATCCAAGTAATTCATCATTGACCTATCACATGAGAACACATACTGGAGTAAAACCTCATGTGTGTCAAACATGTAACAGCGGTTTTACAACAACGACCAGTCTCGCTAATCACATTCGAATCCATACTGGTGATAAACCCTTCGTTTGCCACGTATGTAGTGCTGCATTTGCTGTAAGCTCGGCCTTCAGACGTCACTTAACTCGTCATACCGGAGAAGCCAATTATCTTTGTAAAACTTGCGGCAAGGCATTCAAAAGACTCAGCACACTGAAGGAACATACCTATACACATTCGGGAGAAAAACCTTATGTTTGTAAAACATGTGGTGCTGCTTACAGCCACAGTGGAAGTTTATTTGCTCATCAAAAACGTTGCAGAGTACAGTATGGTGAAATGGTTACTTCTGAGAATAATCATTCACATGTACCACATCATATTCACGTTAATAATGTACAGACAGCGGTCAGATCACTTGCAGTTATCGGACAAATGTTTTAA
Protein Sequence
MEYKVSNLLVNIDNICRVCLTENANSLSIFCQNETDEKYRDLLNKIQESGGIKITEDDGLPTLICSKCINNINLAFKIRQQCQRSDTLLRLYYKKLKESNLKTIHYQEILQPELITPDISQSSQDLFNYLEIQSMDVEEVVVGQEEVPSVESAGMTDDEPPSYKLKLQLLEIGSTTSSSPITNSPNSRTKAQNKVYPEHLGAFENLAFDPLQLPSDKKYTCSICAQAFETLKILRQHRKIHKDELYVCKICPVRCAKADELAIHLKSHQLTQAAVATIQVNNYDNSKDCNDSDVVNDQQKIDHCNEQLLRDKSPDLNDYTTYRVKKSTIKGLSPDNINTNNNINSNINDTNSPIIHKCEICGQIFSKEKGLMRHRAYHESRVICDICGKVCSNQNWLESHKKLAHSGKIDILIKNIIMTECYLDFDRVCRICLTESTNLTSLYCNDSVPGVFPSLSQRISTCGAIELNERDGLPSLICENCIYKASVAHDFREQCQNSDARLRLCYDKPARLQLSLQDSSTQTEVEERTMAKNVNSNYFVKQEIQGFNQDLNTIGVYQNPQVEVTNNQIVSDDKLFLCNIGYQTKELEKQPVLESTQHQNQQHQHQHQLQHQHQHQELDHQDIQHQVLIPEQQQVSIAVAIETEQQLPNSVTIAEMKPTVTQYVDNDLLVNNDDSVEDEDLEDEEEETEIPADGFNKEQDISIDLHEHKWEEESEELVPSKRLTRKAKDIAGKSYSVDEIDEDLPDNNDDDDDEPKFKCKVCSKRYNTSKGLKNHAQVHDKKHKCPVCLKSFYNLENMEKHVKIHESKPHACQLCHTCFAKPQTLVRHLKSHSDKIQGSNNNSIKSNENGTITIVRTEDTEDDDDDRDGFQTNETDEFDSAPGLYKCSECNQFCSTLKNLKRHSLIHGDKKYSCTVCKKYFFRPDTLKKHAEKHGHGLLDNLSDENKLYESDDETFNRSNTLANNINGNGTNDTDNKKVDSDEDGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLVLHQRTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCQTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMVTSENNHSHVPHHIHVNNVQTAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-