Basic Information

Gene Symbol
JARID2
Assembly
None
Location
scaffold:34559-43743[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.4 4.2e+03 -1.8 0.1 45 83 148 187 144 188 0.71
2 2 3.4e-23 1e-19 70.7 0.1 6 89 1315 1396 1311 1396 0.94

Sequence Information

Coding Sequence
ATGGTGCTGAGTAGAAACGACAAGAGGAAAAGGAAAGTTGGTGACCTGGTTGATCTTATGGATCCACTTTCGGAGTCTCCCAAAAGAGCTAAAGTTCACGCTCAAAGGAAATTCGCCCAAGGAGCAGCCACTGTATTTACTTCTCCTCAAACTTTAGTTAAAGAAAAAGAAAAACCTAAACCCACTAAAGTCACTGAGTTGATAACGCACAAACGTCCTAATACTGAAGATTTTTTAACATTTCTTTGTTTTCGAGGAACGTCAATATTACCACCAAGTTTAGATTTTTTTAATGCCGGGTTAAAGAAAGACAAACCAGAGTCAAAAACAACATCAAAAAAATTAAATAGTACAAGTAATTCAACATTTACACCGACACCGAGTACATCTGGAGTAGGATCAAAAGCAGTAACGAATCAAAGTACAGGAGCTAAAACAACCGGAGCAACAAAAGTAGCCGAGCCTACACGTAAAAAAGTTGCGTCAGACATCACAATGCCGATAAATAAATTTAAATCAGCCACCTCGACGATCCAAGCTCTGAAGAAAAAGTACCAGGAGCAACGTCTAGCTAAGCAGAGGATTGAAAATAAATTAAAAAAGACTTGCGTTATAAGAACACGGTCTACTGTAGGTAGGCCTATGCTGAAGACTGTTCACAAATTGGCACCACGTAAATTTTTACGAGTTGAACCCAAGAGACACTGCCTGCGAAGCAACACGACCTTGGAGAAGCCGTTCAAAGGTCATGGAAAGACGAAGATCATCACAGCGTCCAAGGGGACGGCGAAGAAGAGAGCCGTGGTTAAAGAACCAAGCAGCGAATCCTCGAGCTCAGAATCTTCTTCCGAGGACAATAAGTCGGACGTCAAACTTACTCAGCAGATAAAACGCACGATAAAGAGCATAAAAAAGAATGCGACAACGAACAAGCCAGAGTCGAGACGAGTCACGCGGTCTTGTAGAGAAGTAACAGCCACGGCTGCATCAGTTACTCACTCATCCACACAGAGGCCTTCTAGGAAGACTAAAGAAGCTGCTGCTGTTTATATGGAGATATTGAGTAGGAAATTAGTTAGTCCAGATTTAGATAATGACGATAATTTGTCTGTTGATAGCTATCCAGAGTTACCAAACACTAGGCGTCTTGTTGAGACTGAAGCTAAAGTTAAAGTTAAGAAGTTGGTGAAAGAAAAGGGTAAGGATAAGGATAAAGATAAGAAAGAAGTAACGAGTAGTAAATCAAATTCTGGTGGAGATAAAGGCAAAGAGAAGGCTGTAGCTAAGAATAAAAAAGCTGTCAAGGTTCAAGAGATTTCAGAGAGTGAAGAAGAGTCTGTTAGTTCTGAAGAAAGTACGCGAGCTAGACGGATGACCAGACGTAGCAGCGTACCCACGGTGAAGCCAGTTACCCGCAATCTTAGATCATCTTCACGAAATTTTCCGCAGAAGCTCGATTTACCGGTCGTATCAGCTAAAGTTAAGAGCAAAACTTGGGTCAGACGCAAGCGAGAGGTCACTGGCTCACCAGTAGAAAAAGTCAAGGAGAAAGAGAAGAAAACAAATGAGAAAAAGAACAAGGAGGACAAAGTGTCGGAGGAAGATTCTAGTGTGAGTAAAGTTAAGAAGAAAAAAGAAGAAAAGGATGAAAAAGTTGAAAAAGAAAAAGTTATAAAAAAGAACGTTGGGAAGGAAAAAGTTGAGAAAGATATCAAAGGGTCAGATGATGAAGAATCATTTCGTGGATTTACGAGTAAGCCGATCACAAAGGTAATTAATTCTCGCAATAGTCTAGTTAGTGTGAATTTAATAGCTTCTGAGGAAGTTAATAAAAAATTAAATGCTTTGAAAAGCACAGCTACTTCTGAAGTTAAAGAAAAAGTTAGTAAAACTGAAGCTTCTTTGCTTGTCAATGAGGGGGAAGTTAAATCTGAGCAAAAAGAATCTCTGTCGAGTCATGTACCTGTTGTGGGATCGCTGTCGTCTCAAGCAAGCATTTCCGAGCCGGATAAAAAATGTAATCGCGTTGAGAGTTTAAATCCCCCGGTAGTAACGCCTGTTATTGATATTCCACTGATAACTTCTTCGCCATTGGGGCGAAAAGAGCGCGTTAATATGTCGACGGAGCAAATTGAAAAGTGGCTGAACGAAAGTTCTATGGCGAAAGAAGAGAGTAAAGCTGAGATGGAGACTGTTAGTAATTTTACATATGAAGTTCCGGCTAAAAGTAAGAACGACATGAACCATTTATCGATACCTACCCGGATCCAGCATCTCGTGAGACCAGTGAATGTTGCAATTGCTAAAATGGCCGAGAGATCCTTGACGCAAGAACGTCTGAATAACGCAGTTAGAGCTGCTACGCTTATCAATGCGGGGACTATTATAGGAGCTGCTGGAATTGCTAATTTGTCTACTCCAGTGAGTCTTGTACCCACAACTAACAGGAATAAAATAAACGCCGATATTAAGGAAATTATTAAAGGAAGAATCGCTAAAACTACCGCCTGTACTGCGAATAAAGAGACTGTTTGCGAAGATAGTGACGTAAGCTCACGAGCTGACGGAACGACTTCGGTTGAAGGATCTCCTGAGAAAAAATCTCCTGATAAGAAGTCAGTGGTACGGAAAACATTTCTGCCTAAGGTTAAGGAACGTAAGACAGCTATTCCTAGTATTAATGCTTTTTCACCGGAGAATGAGAGCAGTGTGTATGCATTTGAGAGCGACACTGAAGCTCCGGTTAACACTCCGTTCAGACGGAAGCAACGTGACAGCAAATCTGGAGCTTCTGGTTCCTCTGACTTGGATGTGTCGAGAACAGAGAGCGAGGACGGACCTTCCGCAAAGTCCACGGAAAAAGAGGATAAAAGTGGAAGTAAGTCAAAAAGCGTCGGTACGAGCAGTGAAGATGTTGGTGCTGAAGTTAAATCATTTATAACTTCCGGAGATAAAATCAAGGAACCGAGCAGTAATTATCAAATCCCTGATACATTTCGCAACATGTCTAATGTGCAGGTAGTTCCGCTGGGAAAAATTCCCAGTGTGTGGAATAATGTCAACTGCAGTACATCGATAGCTGTCCAGGTGAATTTTGACGAACAGTCTCAGGATTTGCAGAACCAGGGAGCTGAAGAGAGCCAGTTGATTCAACGCAGCACGGAAATATCCACGCAAACTGAAAACACAAATGAAAATGAAGACGAAAATGATGCTCATGTATTTTACATTCCCTTGCAAACAGTCACGAGGAGTGGTCCCAATTTGGCGCAAGGCCAGCCGTTGATACAAGGAGTGGCTGTTAAATTGGGCACGGAGGGACCTACGGGACCTAATCAGCGAGTGTTGTTGCGAGCGCAGTTGGTCACCAAGCCGCCGATGGCTGTTGCGAGGTGTCCACCAGTGGGAACTGTTCAACCTACTACCCGAACACCCCCAACTGATATCAGTGATCCCGTAGCTTCTACTTCAAGGTCTACATCCACGTCGACATCCAATTTGTCACCGATAAAACCTAATGTTGAGACGTCGCAAGAAGTCGCTAAACAAACTGGTGTTGCGGAAAAAATTCCTAAATCTCCTAAAGCAACTCGTGAGCGTAAAAGTTCAGCAGACGCGCCTAAGGTTGCCAGAAAACTTTCTGCTAAGGCTAAGAAGAATGCTGAGATGGCTGATAAGTTAAAGTTTTTCCCAAAAATGGAGGAGAAAGGTGAAGCAAGGTTAGTAGACGCTCCAACTTTTTATCCTTCTAAGAAAGATTTTCAGGATCCGCTGGAGTATATTGATAAAATTAGACCTATTGCTGAGAAATATGGAATATGCCGGGTTGTACCGCCTTCTAATTTCAAGCCTGAGTGCAAAGTGTCGGATGATATGAGATTCACTGCCTACAATCAGTATATTCATCGCATGCTCCATCGGTGGGGTCCAAATGTTAAAGAAATGATGGCGATTAAAAAATATTTGGCCACTCAGAGCATCACTTTAAATCAACCGCCGTGGATTGGAGGTATGGAAGTAGATTTGCCTCATTTGTATCAAACAGTTCAGAGCTTAGGGGGACTGAAAGAAGTGATTGAGAAAAAAAAGTGGCAAAAAGTCGCAGATGGAATGAAAATTCCGAAATCAGCCCAGGATCGTGTCACTAAGCTCGATGACATTTATTGCAAGTATTTGTTACCCTACGACACGTTATCAACGGATGAGCGCGAGAAGTTGTTCGACGAAGTGGAGGCTGAGTGGAGAAAACGCGAGAGCAAAGCACTACAAAGACTCAATAGTACACTGTCGAGTGACAATGATGATGATGAAGACGATGACAGTTCCGATGAAATCGAGGAGTGTATTGTCAAGGGTAGAAATATGCCGTTGAATGCTTTCTATCGGATTGCGCGAAACACTCAGCGCATGTGGTTCTCGGAAAACCAGAGTGGGATTGAAGCTGATGGAGCTTCTGCCTGTGAAGTTGAAGCCGCTTTTTGGAAACACGTGTCTGAGCGCAAACGACATGTTTGTGTTCACTCTGCAAGCATCGACTCGAGTGGCCGTGGGTTCGGATTCTCCGTTGCTAAGAACAGTCCCTTCGCAAGACATCCTTGGAACCTCAAAGTTTTGACTAACAACAACGGTTCGGTTCTGAGAGCCCTGGGCCCGCTGATGGGTGTCACTGTCCCCACGCTTCATGTTGGCATGCTTTTCAGTGCTTGCTGTTGGTACCGCGATCCTCACGGCCTGCCTTGGATCGAATATTTACACACTGGCGCTAAAAAAATCTGGTACGGCATTCCTGATGAACACAGTGATAACTTCCGAGAAGCCTTGTCGAAAATGGTACCGAGATTTTGTAAAAATAAAACTATCTGGCTGCCCTCTGACACTGCCATGGTACCGCCAGAAATGCTTGTTAGCAATGGTGTTCCTTTGTGTAAAACTGTTCAAGAACCTGGACAATTTATTGTGGTTTTTCCTAAAGCATTTACATCCAGTATTTGTACGGGATATGTTGTCTCTGAAAGTGTTTACTTTGCACAGACTACGTGGCTTGAACATGCTGAACAAATATTTAAGGATCTTCAAGATAGCTGTGAGCCATCAATGTTCTCGTTTGAACGGTTACTTTTTAGTATTATTAATGATACTAGATCTCATGTAGATGTATTAAAACAGATTTTACCGGTTGTTACAAAAATACGGGAGCGAGAATTAAACTATCGTCAACAATTAGAATATTATGGATTGAATAATAAGGAAAAATTACCATTACCTGGTAGCGGTAAACGTAAAAAAGGACAGAAATTTTCTGAAGATGAAGACGATTATGAGTGTGAAAATTGTCGCGCTACATTGTTTGTTTCTTTAGTTAATAATTCTCAAGACGATAGTGTTTACTGTCTTCCTCATGGATTACAATTGATAGGACGTAAAAAACAAGTACTTAAACATTGTACTTTGAAGTATACGTATGGTGAGGACGAGCTAGACGAATTAATTCACAAACTGGAGGATAAAATTGAAGCCAAATCTAAAAGAACTAATCAAACTCGACAAGCTAGACTGTAA
Protein Sequence
MVLSRNDKRKRKVGDLVDLMDPLSESPKRAKVHAQRKFAQGAATVFTSPQTLVKEKEKPKPTKVTELITHKRPNTEDFLTFLCFRGTSILPPSLDFFNAGLKKDKPESKTTSKKLNSTSNSTFTPTPSTSGVGSKAVTNQSTGAKTTGATKVAEPTRKKVASDITMPINKFKSATSTIQALKKKYQEQRLAKQRIENKLKKTCVIRTRSTVGRPMLKTVHKLAPRKFLRVEPKRHCLRSNTTLEKPFKGHGKTKIITASKGTAKKRAVVKEPSSESSSSESSSEDNKSDVKLTQQIKRTIKSIKKNATTNKPESRRVTRSCREVTATAASVTHSSTQRPSRKTKEAAAVYMEILSRKLVSPDLDNDDNLSVDSYPELPNTRRLVETEAKVKVKKLVKEKGKDKDKDKKEVTSSKSNSGGDKGKEKAVAKNKKAVKVQEISESEEESVSSEESTRARRMTRRSSVPTVKPVTRNLRSSSRNFPQKLDLPVVSAKVKSKTWVRRKREVTGSPVEKVKEKEKKTNEKKNKEDKVSEEDSSVSKVKKKKEEKDEKVEKEKVIKKNVGKEKVEKDIKGSDDEESFRGFTSKPITKVINSRNSLVSVNLIASEEVNKKLNALKSTATSEVKEKVSKTEASLLVNEGEVKSEQKESLSSHVPVVGSLSSQASISEPDKKCNRVESLNPPVVTPVIDIPLITSSPLGRKERVNMSTEQIEKWLNESSMAKEESKAEMETVSNFTYEVPAKSKNDMNHLSIPTRIQHLVRPVNVAIAKMAERSLTQERLNNAVRAATLINAGTIIGAAGIANLSTPVSLVPTTNRNKINADIKEIIKGRIAKTTACTANKETVCEDSDVSSRADGTTSVEGSPEKKSPDKKSVVRKTFLPKVKERKTAIPSINAFSPENESSVYAFESDTEAPVNTPFRRKQRDSKSGASGSSDLDVSRTESEDGPSAKSTEKEDKSGSKSKSVGTSSEDVGAEVKSFITSGDKIKEPSSNYQIPDTFRNMSNVQVVPLGKIPSVWNNVNCSTSIAVQVNFDEQSQDLQNQGAEESQLIQRSTEISTQTENTNENEDENDAHVFYIPLQTVTRSGPNLAQGQPLIQGVAVKLGTEGPTGPNQRVLLRAQLVTKPPMAVARCPPVGTVQPTTRTPPTDISDPVASTSRSTSTSTSNLSPIKPNVETSQEVAKQTGVAEKIPKSPKATRERKSSADAPKVARKLSAKAKKNAEMADKLKFFPKMEEKGEARLVDAPTFYPSKKDFQDPLEYIDKIRPIAEKYGICRVVPPSNFKPECKVSDDMRFTAYNQYIHRMLHRWGPNVKEMMAIKKYLATQSITLNQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSTDEREKLFDEVEAEWRKRESKALQRLNSTLSSDNDDDEDDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFSENQSGIEADGASACEVEAAFWKHVSERKRHVCVHSASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNNGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSDNFREALSKMVPRFCKNKTIWLPSDTAMVPPEMLVSNGVPLCKTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQTTWLEHAEQIFKDLQDSCEPSMFSFERLLFSIINDTRSHVDVLKQILPVVTKIRERELNYRQQLEYYGLNNKEKLPLPGSGKRKKGQKFSEDEDDYECENCRATLFVSLVNNSQDDSVYCLPHGLQLIGRKKQVLKHCTLKYTYGEDELDELIHKLEDKIEAKSKRTNQTRQARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00380088;
90% Identity
iTF_00380863;
80% Identity
-