Basic Information

Gene Symbol
ARID5A
Assembly
None
Location
scaffold:1239-5515[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.7e-25 8.1e-22 77.4 0.0 2 89 21 106 20 106 0.95
2 2 5.3 1.6e+04 -3.6 0.5 61 84 555 579 540 581 0.56

Sequence Information

Coding Sequence
ATGTTGATCTCTTCCAGGGGCGAAATGATTCGCAGGAGCGAGAGAAAAATTACTGGAGATGAAAAAAGGTTTATGGTTGATGTTCAGAGCTTTATGAGCCTCAGAGGGACGCCTGTATTAAAGATGCCATTACTTGGTTACCGACAGATTGACTTGTATTTGTTTTATAAACAAGTTCAGAAACTAGGAGGTTATGATACTGTGACGTCTAATCGGCTCTGGAAGTCAATTTATGATGAAATTGGAGGTAATACTGGGTCGACTAGTGCTGCTACTATTACACGACGGCATTACGAAAGGTTACTCCTGCCTTACGAGCGCCACCAACGTGGGGAAGAGACAAAAGTTCGCCCAGTAAGCCGGCGGAGTAAGTCAATCTCTGATTTACCAAGTGATTCGCCGGATTCTCCTAAGTCACCTGCAGAAAGCTGTCTCAACACAAACAATATTAACCTTAACCATAGTAATAATAACGATAGTAATAGCAATAATAATAATATTAATAATATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTATCGTGAGCATTCCCGATAAACCAAAGACTGAACAAAAACCCTCGTCATTGCGGAGTGTGCGCGTGAAACCGGAACGATTAAAATCCTTATCGATATCGTCGTCATCGTCAACGTCTTCATCGCCCTCACCTTCGCCCTCATCCATTTCTGTTAATAATATTATAATTAATACTAATCATATTAATAATAATAGTTCACCGTCTGATTTACTGGCAAGTCCGCTGTTGACGTCAACGCCATCTTCTATTTCTTCACAACAACAATCTTCATCATCGATCGATAATATATCGATTAATTCACCTACTAATTTTGATGGTATTTCAACGCCATCTGATAGTCGAACAACAACAACAACAACAACAACAACAACAATGGATTGTAATAAAAAGTTTGATAACTCGAAGAGTAATGCTGTTTTATTGCCACAAAATAAAGAAAACATTCCAATGTATGCTGTTGGAATAAATCAAATTTTAGAACAAGATAATTTTAACCAACAAGACAGATATCAAATCCAACAAAAAAATTTGGAAGATCAGCAAAATTTTGTTCAACAGAAACAAGAACGAGAACAAACACAAAGTTGTGAACAAGAATTACAAAATCAACAAGATTTAGAAAATCTACACCAACAACAACAACAACAACAACAACAACAACAAGGCTTACAATCGGAACATCACAAACAACTAAACGATGACTTAAAGCAACTAAATGATGACTTACAAGAACAAGAACAGCAAAATATTAATGAGCAACATACTTCGCCACAAACACAACAACAAATTTTAGAGAAAAGACAAGAACAGCCTAACTTGTACGGTCAAGAAAATATACAACAACAACAACAACAACAACAACAACAACAAAATCAAAGTTTGGAGAAAAGACAACAAGAATTTCAACAACAAAAAAAAAAGAAGCAAGAACAGCAACAAAATTTGCTACAACAAGAACAAAATTCAGAAAAACGACAACGGCAACAAGAGTTTTCGCAAAATTATGATCTCCAAATACAAAAACGAAGTATAGAACATGAAAAAAATTTGGAAACATTACAAAGACAGCAACAACTCCAACAAAGTTTCGTTCCTGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAATTTTTCGGAAAAACTTTGATCAGCAAAGACCCCAACAAATACCAAGAGTTCCATCACCAGAAGTAATCGACTTAGAATCTGAGCCCGAAACCCCGCCTCCAACAACACCAACAATAACAACAACAGCAATCACATCAACAACAACAGCAATCACATCAACAACAACAACAACAACAACAACAACAACAACAACAACTACAACAACAACTACAACAACTACATCTACAATAAACTCCAGGGAGAAAATAATAATCCCAACTTTTAAGAAACGAAAGCTCGAAATTCTTCGAGAAGGGGGTTTGGAAGTAACTGCAGTGGACCTAGCTGACCGACCTAGTGTGATTCAAGCTCACCCGAACTCTCCATTACCTAACAGCGCACTTCCGTCTCCCAAGGATCAACCAGAACTGAAGCAAAAACTAATATCAGTAACAGTGACCCCTGACATTTCCCACATACTAACTGCCGATAAAATGAACAACAATTGCAATGCTAAAAAGTACATTGCGCCGGTTCCTCCAAAGGTTATCCAGTCCCACTCGATCTTTTCCGGAAACAAACGAGTGATCTACGGGAACCCCAAAGACATTTTATCAAGCTCAAAGTACGCCGCTAGTTCTCCAGATGTTCTCGATTTGACAAAAGCCGCTCAAAGTTTCTCGCGTCCCAATCTCGAGATCGTCCGAGTTCCGGTTGTTCCTCGTCCTACGTTATTTAAAAATTCCAGTTCTAACCTGGCCGATAATTTCGACAAGCCCCCTGTCGATAAGTTACCGAACAAAATATTACCAATGTTAGACTCGAGGACAATCGCGTCAAACAACTTGGAGATAACTTTAGTGAACCCCAAGGGCAACAAAATATCCTCCAGCTACCAGACTCCAGTTCGACAAAATGACGCCGTGGTGACAAAGGTTAAAAGTTCCTCCAAGTATCCGGAGAGTCCGTACTCCAGGAAAAACCACATTGTCAATGTTCCGAACCTCAACAATCTACACTATGGCGGGTCAAGCAGCGCCACAGTTCGGCAAGTTCCAAGAGTTGACAAGATGCCCGACAGCAGGAGGATCAGCGAGAGCGACTTGGGGAAGTACAATTTTAAGATGGCGTACCAGCAGTCCAAGGAGAGAGAGAGATACGACAGACGACACAGTGTTCCCAATTTATCGAGTGGTTTTCTACCGACCCCCCAGTTTTATCCACCAGCGCCACCTGGTGTCGTTCAGAATAAGTTTATGCCTGGGCCCATGATCGACCCGATATATTATTCTGCAATTTATAACGGGTTATTCACTTCCGGTCAAGTTTCCTCTTCTATTAGGCCACCTGGTCACAGTCCTGTCGCGTCATCTGTTTCAGGAGGTGGTTCAGGAAACCAGAGCTACCTCCCCCCATTGGAATTTAATGATTATTATAAAAATTTACTGGCCCAACAGCAGCAACAGCAACAGCAACAGCAACAGCATCAACATCAGCATCAGCATCAGCATCAGCATCAGAGGTTGCTAATGATGACTCAACATCAAGCTCCAACTTCTAAGTAG
Protein Sequence
MLISSRGEMIRRSERKITGDEKRFMVDVQSFMSLRGTPVLKMPLLGYRQIDLYLFYKQVQKLGGYDTVTSNRLWKSIYDEIGGNTGSTSAATITRRHYERLLLPYERHQRGEETKVRPVSRRSKSISDLPSDSPDSPKSPAESCLNTNNINLNHSNNNDSNSNNNNINNINNNNNNNNNNNNNNNNNNNNNNSIVSIPDKPKTEQKPSSLRSVRVKPERLKSLSISSSSSTSSSPSPSPSSISVNNIIINTNHINNNSSPSDLLASPLLTSTPSSISSQQQSSSSIDNISINSPTNFDGISTPSDSRTTTTTTTTTTMDCNKKFDNSKSNAVLLPQNKENIPMYAVGINQILEQDNFNQQDRYQIQQKNLEDQQNFVQQKQEREQTQSCEQELQNQQDLENLHQQQQQQQQQQQGLQSEHHKQLNDDLKQLNDDLQEQEQQNINEQHTSPQTQQQILEKRQEQPNLYGQENIQQQQQQQQQQQNQSLEKRQQEFQQQKKKKQEQQQNLLQQEQNSEKRQRQQEFSQNYDLQIQKRSIEHEKNLETLQRQQQLQQSFVPEQQQQQQQQQQQQQQQIFRKNFDQQRPQQIPRVPSPEVIDLESEPETPPPTTPTITTTAITSTTTAITSTTTTTTTTTTTTTTTTTTTTTSTINSREKIIIPTFKKRKLEILREGGLEVTAVDLADRPSVIQAHPNSPLPNSALPSPKDQPELKQKLISVTVTPDISHILTADKMNNNCNAKKYIAPVPPKVIQSHSIFSGNKRVIYGNPKDILSSSKYAASSPDVLDLTKAAQSFSRPNLEIVRVPVVPRPTLFKNSSSNLADNFDKPPVDKLPNKILPMLDSRTIASNNLEITLVNPKGNKISSSYQTPVRQNDAVVTKVKSSSKYPESPYSRKNHIVNVPNLNNLHYGGSSSATVRQVPRVDKMPDSRRISESDLGKYNFKMAYQQSKERERYDRRHSVPNLSSGFLPTPQFYPPAPPGVVQNKFMPGPMIDPIYYSAIYNGLFTSGQVSSSIRPPGHSPVASSVSGGGSGNQSYLPPLEFNDYYKNLLAQQQQQQQQQQQHQHQHQHQHQHQRLLMMTQHQAPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00380861;
90% Identity
-
80% Identity
-