Basic Information

Insect: Cotesia rubecula
Gene Symbol: -
Assembly: None
Location: scaffold:14354-20699[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.19 20 6.2 5.6 1 23 385 407 385 407 0.98

2 8 6.2 6.4e+02 1.5 3.1 1 21 413 433 413 436 0.94

3 8 8e-05 0.0083 16.9 0.8 2 19 443 460 442 464 0.90

4 8 7.5e-05 0.0078 17.0 4.1 1 23 470 492 470 492 0.99

5 8 0.24 25 5.9 1.7 3 13 500 510 498 523 0.85

6 8 0.00099 0.1 13.4 0.5 1 23 529 551 529 551 0.98

7 8 3.1e-05 0.0032 18.2 2.0 1 23 557 579 557 579 0.96

8 8 2.5e-06 0.00026 21.6 2.7 1 23 584 606 584 606 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.19	20	6.2	5.6	1	23	385	407	385	407	0.98
2	8	6.2	6.4e+02	1.5	3.1	1	21	413	433	413	436	0.94
3	8	8e-05	0.0083	16.9	0.8	2	19	443	460	442	464	0.90
4	8	7.5e-05	0.0078	17.0	4.1	1	23	470	492	470	492	0.99
5	8	0.24	25	5.9	1.7	3	13	500	510	498	523	0.85
6	8	0.00099	0.1	13.4	0.5	1	23	529	551	529	551	0.98
7	8	3.1e-05	0.0032	18.2	2.0	1	23	557	579	557	579	0.96
8	8	2.5e-06	0.00026	21.6	2.7	1	23	584	606	584	606	0.96

Sequence Information

Coding Sequence: ATGGAGATGAAGTTACCTGAACAAGTGCATCAAGTCTGCAGATTATGTGGACAATTCGAAAGTATATATATTGATATTTTTGGCGAGGAAGGTACTAGAAGGTTGCTTGGATTAAAAATCCATAATAAAATAAATATTGTGATACATGAAACGGATCCTCTGCCAAAGACTATATGCGTTCAATGTCTGGGTAAACTTGAATTCGTTTGTGACTTTCAAGAGGAATGTCTACGTACCCAACAGCTGTTACGCGATCAGTATGATGTACCTTCTATACAAGACATCGTAAATGTTATTGAGCCAACTGAAATTACAACAAAACCCAAAAGAACACGAACTTCACCGCAAACAAGGTCTAAAAATAGCGATAAAGATACGAATGAAGATGTTGTCGATGAAACACCTAATCGAAGATGGTTAAGGAGTCGTAATATAACTGAATCTCGAATAAAAACAAGAAAAAAATCTAAATCAAAAAATATCACACTTAAAAAAGTTACTTCGAGGACAAAATCAACCTTAAAAGAAGGAGTATCAATAGTAACTCGATTACGAAGTCAAAATCAAAATCAAAACCGAGTTAATTCAAATTCTGAGGCTATTAGTGAAAAGGCGAGTAACAATTCCAGTGCTTCAAAAACACAAGAAAAAGTTACTGATGAAAATGGAATGATCCAAATACCAACTTCAGCATTAAATAAAGTTTTAACTGCTGTAACATCATCGCCAGAAGTTGAAGTTTCTGTTAAAGAATCAAGCAATCGTAATGGCGATATCGAAGATATTAGTTTTACGTTAGAATTGAGAAAAAAACAAGAAACAGAGTCAACTGTTACTGTATTAGCTCGTGTCTTTCCTGATCAAGGTTCATGTCTTGTAGGGTCTGAAATAATTAATTTATTGGAAGATGAAAATAATTCCGAGTTAAGTCAAATTATAAATTCAATTGTAAAAGGTAAAAATAGTAAAGATTTACCCTCTACGAGAACAGCTGAATTAGAGGAATTGGAAAAACGATTGTCTAGTATCAGTGACAGTGGAGGTGGCGGTATTATATCATCGAGAAATCCTGAAGAGCTTTTTCGCATTGATGGTGAAGAAATTCGCGTTGATGATAACGTTGAAAGTACCACAGTTGACGGTCAATCTGGATATTCGTGTAAATTATGCCGTAAATTTTATGAACGCCGGGATAAATGTACTGTACATGTAAAAACACATCTTGGTATAAAACAATATGCTTGTACACTGTGCGTTGCTAAATTTGTATGTAAATCAGACGTTATGAAACATATAAGATGTTCACATACAAATCCACGACCTATGCAGTGTCCTAAATGCCCAAAACGTTTTAGATCAAAATTTGATTTGACTGAGCATGATAATGTTCATAAAGGCATTAAACCATACCAATGTTCCGATTGTGGACAGAGTTATCATCATAAAGTGTCCTTACAAATGCACgttaaatcacatcttccaccgcaaaatttagcttgtgaatattgcggtaaagtatttccattccgtacacTTGCGTCAAAGTATAAAGCACATGTATTACAACATTCAAATCCAAAACCATTTGTCTGCAATGTTTGTAATAATCGTTATGCATCAAAAGCATTTTTAAATGAACATCTGCTTAAACATGAGGGATTAAGGAAGCATATATGTCAAAAGTGTGGAGCTAGCTTTGCTCAAGCCAGTCATCTAGCTGCACATCGTCATGTACACGGTGAAAAAACCCATGCTTGTCCTGAATGTGGTCGAAAATTTAATAGACGTGATAATATGAAAGTACATAGGAAAAGGCACTTTGCTGAATCTGGAAGAATTGTTACGACTGATAATAAAAATCAAACGGGAATAAGCGATAAATCAACGCCCTCGCCAGCTTCAATAGAAGAAAATGATGGCTTATCTCAGGTTATTTGCAAACAATGTTTAGGAAATCTTGACACTTCATGTGATTTTTATGAAAAACCTCATGAAACTCAGCATGACTTAAACAAAAAGGAAGGACAAAGAAACGATGACAATTGTTCTGAAGATTCTGAATTAATTGATGAAAATAAAGAAAATGAGCTTCCTCCAGATTCTAAATCACCTCAAACTGTTCTAGAAAAAAAAGTTACTTTAAACTGTAAATCATCAATATCTCCATCAGAACTCGAGTCAACTTCAAATTTAACTAACTTACCTTCAACTTCAACTTCAACTTCAACTTCAACTCACCCATCAACAGAAGTCACAAGTCGAGTTTTAGCAGATATTACAGATCAACATCAACAACGTCCAAGATCTAATCTTTGTAAAGAATTATTCCCTTCAGTTTCAAGAGGTATTAAAAGGCGGCGTGAATCTTCAGACTCACCAGAATAA
Protein Sequence: MEMKLPEQVHQVCRLCGQFESIYIDIFGEEGTRRLLGLKIHNKINIVIHETDPLPKTICVQCLGKLEFVCDFQEECLRTQQLLRDQYDVPSIQDIVNVIEPTEITTKPKRTRTSPQTRSKNSDKDTNEDVVDETPNRRWLRSRNITESRIKTRKKSKSKNITLKKVTSRTKSTLKEGVSIVTRLRSQNQNQNRVNSNSEAISEKASNNSSASKTQEKVTDENGMIQIPTSALNKVLTAVTSSPEVEVSVKESSNRNGDIEDISFTLELRKKQETESTVTVLARVFPDQGSCLVGSEIINLLEDENNSELSQIINSIVKGKNSKDLPSTRTAELEELEKRLSSISDSGGGGIISSRNPEELFRIDGEEIRVDDNVESTTVDGQSGYSCKLCRKFYERRDKCTVHVKTHLGIKQYACTLCVAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGIKPYQCSDCGQSYHHKVSLQMHVKSHLPPQNLACEYCGKVFPFRTLASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGASFAQASHLAAHRHVHGEKTHACPECGRKFNRRDNMKVHRKRHFAESGRIVTTDNKNQTGISDKSTPSPASIEENDGLSQVICKQCLGNLDTSCDFYEKPHETQHDLNKKEGQRNDDNCSEDSELIDENKENELPPDSKSPQTVLEKKVTLNCKSSISPSELESTSNLTNLPSTSTSTSTSTHPSTEVTSRVLADITDQHQQRPRSNLCKELFPSVSRGIKRRRESSDSPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -