Crub005992.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:4385-15025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.024 2.5 9.1 0.7 1 23 153 175 153 175 0.97 2 14 0.064 6.7 7.7 0.2 1 20 182 201 182 202 0.95 3 14 0.00019 0.02 15.6 2.9 1 23 212 234 212 234 0.98 4 14 0.00021 0.022 15.6 0.1 1 23 240 262 240 262 0.98 5 14 4.2 4.3e+02 2.0 0.1 1 19 268 286 268 288 0.90 6 14 0.0048 0.49 11.3 6.4 1 23 558 581 558 581 0.93 7 14 0.0005 0.052 14.4 3.8 1 23 587 610 587 610 0.96 8 14 0.038 3.9 8.5 1.7 1 19 616 634 616 637 0.94 9 14 0.00029 0.03 15.1 1.0 1 23 646 669 646 669 0.97 10 14 0.0009 0.093 13.6 0.4 1 23 674 696 674 696 0.99 11 14 0.0052 0.54 11.2 4.0 1 23 702 724 702 725 0.95 12 14 0.00017 0.017 15.9 1.8 1 23 740 762 740 762 0.98 13 14 0.54 56 4.8 0.3 1 23 768 791 768 791 0.94 14 14 2.2e-05 0.0023 18.6 2.0 1 23 797 820 797 820 0.98
Sequence Information
- Coding Sequence
- ATGAGTACAAATAACATTATAGAAATAATAGAATTGAATGATGATGACAGTGATAGTTCATCTGTTGTAGAAATAGAATGTGTACAAGCACCAAGGAAAACTGATCGAAATGTAACCCAGAATGAAGGTAATTTTATTGATACCGGTTTACCAAATCCCAATCAAATAAAAATTACAAGAATTGAATCATTAAGCGGAAAGGAACATTATTGGACGGATGATGTAAAACCTATAAAACCAGCTACGCTACGAGAAGTTTTAACGCCGCTAGATGATTCATCTTCAAATTCCTTGTTGAAATTTCAACAAAATTCTGCTACTGGTCAGTTCAATCTTGTACTTCTAAAAGAAGAAGAAACTACTGAATTCGCTGAAGAATCTGAGACGATCAACTTATCATCTGATTTAGACTATCATAATGGAGAGTTTAACTCAACGTCAAGACATCATAAAATTTATCAATGCATGGAGTGCGACTTTGCTGCATTCAGTAAAATGAGTTTGAAAACACACACTAAAGCTCATAATAATAATAATAACTCATTCAAGTGTCCTAAATGTCCATTTATTGCTATTAACAAAGGCACCTTCAGGTCACATTATATATGTAAACATAGTAATGTTAAAAAGCCGTTTCAATGTCAAATTTGTCATTTTTCGACATACTTCCAATCAGCTTTACAGCAACATATTAAAATTCACAGTGCAGACCGCTCGTACGAATGTCAATATTGCCCATACGCTGCCATTTCTAAAAGTTACTTGGCAATTCATCTTCGCAATCATTTTACTCAGCCTAAGTATCCATGCAGTGTATGTTCCTTCTCAGCGTTATCTGCAGATCAATTAAAAAATCATTTCATTTGTCATAATCAAGGTTATGCTTTATATAAAATAAACTTACGTTCTCCGGTAATCTTGTATAATCAACATAGTAATAAATTTGATAAATTCATGATAACAATGAACTCAAGCAACATAATTCATCTTGGAGACTCTGAATCCGAGTTCAGTGGCAGTATTGCTTGGATGGAAGCTCCCGATGACATTTCATCAGGTTCGTCTGTTTTTGGGGTACAAGAATACGTTGATGAGACTTTTCTTGTACCGAAAGTGAGGACTAGGCCAAATAAAAAAAAAAAAATTTCAAAGAATCTCAAGGATCGGAATCCTTTGAAAAATCGGCTTGTTGATGGTATAACTTTTGAGAAAGCTGTTTCAAAGAGATTTAATTTTAAAAAACCAATTATAAATAATGACACTTGGAAGAAAAAAATACTTGAATTCAAACGGGATAAAAATATTATTTCCAATGACGTTATTTCTGAGAACTTAAACAATCCAAGTGTTCCAAAAAAAAGTTTTCCAGTTATTTTGCCAGAAAAAGTCTCAGTATTTGAAGAATTAAATCAAGAAGAGTTATCTCAACAATCAAGTGAGCACGAATCTACGTGTAATGAGAATCCTAGACTGTATAATTTATTAGATGCAAATTTTCATGCTCAGGCAGAATATCTTCCTGTAGTTTTGCTTGAAAGAATCCAAGTACCTGAAAAAATAGTAAACACATCAACTGCACATGTAGAATCTGTGAAGAAACCAAATCAAAATTCAGTTGATAAAAATTCTTCGAGTTTTAAAAAGTCAAAGCCGGCGATAAATAAAAAAGAGCACGAGTGCGAACAGTGTGATTACAAATGTAAACGAAAAAGTGACTTTATAAAACATCATATATTAATTCACTCTAGTGATCCGCCATTCAAATGCCCAAAATGTTCTCATAAAACTAAACGTTTAGCGGATCTGAGAAAGCACATTAAATTTCTTCATAATAATGAATTTCCGCACACATGTCCACATTGTTCACTCGGATTTACTGAATTGATTCAACTCAATAATCATAATCACAGATGTTCTTTTGCCGCTGAAAAATTATTTGAGTGCGAGATTTGTAAGAAAAGACTTGCTACACCTAATACCTTGAGTACTCACAAGCGCTCGTTTCACTCAGCTGGTTCATTCACTTGCTCAATTTGTCAAGAAATACTTGGAGATAGATACTCACTTGAACTTCATAGAAAAACTCATGAAAATGGACAAACGTTTACTTGCAAAAAATGTCCGTTTAAAACAGTTTATGCAACCAGCTTAAAAAGACATTGGAGTAGACACCATAAAGACGAGAACAATTTAATAAATAATTACGATGAAAAATATTACCGCTGCAAGGAATGTAAAGTTTCATCAAAATATAAGGGCTCGTTGAAAACTCATATAATGAATCACTTAGGTCAGAAGCGTTATAAATGCGCAGAATGCAATTTCACAAGTTTATACTTAGCAAGTATTAATAATCATATCAGATCGATTCATAGTAAAGAACGCCCTTATAAATGTTCTGACTGTGAATACACATGTGTTCAAGCATCTAGCTTAAAATATCACATCAAAAGTGTTCATGAAAAAATAAGTCTATCAACGTGA
- Protein Sequence
- MSTNNIIEIIELNDDDSDSSSVVEIECVQAPRKTDRNVTQNEGNFIDTGLPNPNQIKITRIESLSGKEHYWTDDVKPIKPATLREVLTPLDDSSSNSLLKFQQNSATGQFNLVLLKEEETTEFAEESETINLSSDLDYHNGEFNSTSRHHKIYQCMECDFAAFSKMSLKTHTKAHNNNNNSFKCPKCPFIAINKGTFRSHYICKHSNVKKPFQCQICHFSTYFQSALQQHIKIHSADRSYECQYCPYAAISKSYLAIHLRNHFTQPKYPCSVCSFSALSADQLKNHFICHNQGYALYKINLRSPVILYNQHSNKFDKFMITMNSSNIIHLGDSESEFSGSIAWMEAPDDISSGSSVFGVQEYVDETFLVPKVRTRPNKKKKISKNLKDRNPLKNRLVDGITFEKAVSKRFNFKKPIINNDTWKKKILEFKRDKNIISNDVISENLNNPSVPKKSFPVILPEKVSVFEELNQEELSQQSSEHESTCNENPRLYNLLDANFHAQAEYLPVVLLERIQVPEKIVNTSTAHVESVKKPNQNSVDKNSSSFKKSKPAINKKEHECEQCDYKCKRKSDFIKHHILIHSSDPPFKCPKCSHKTKRLADLRKHIKFLHNNEFPHTCPHCSLGFTELIQLNNHNHRCSFAAEKLFECEICKKRLATPNTLSTHKRSFHSAGSFTCSICQEILGDRYSLELHRKTHENGQTFTCKKCPFKTVYATSLKRHWSRHHKDENNLINNYDEKYYRCKECKVSSKYKGSLKTHIMNHLGQKRYKCAECNFTSLYLASINNHIRSIHSKERPYKCSDCEYTCVQASSLKYHIKSVHEKISLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -