Crub012318.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- Prdm15
- Assembly
- None
- Location
- scaffold:9718-13697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.9 5.1e+02 1.8 0.0 2 23 234 255 233 255 0.93 2 14 0.034 3.6 8.6 0.9 5 21 266 282 263 285 0.86 3 14 0.00046 0.048 14.5 3.3 1 23 413 435 413 435 0.97 4 14 0.012 1.3 10.0 1.3 1 20 439 458 439 460 0.94 5 14 1.4e-06 0.00015 22.4 1.2 1 23 472 494 472 494 0.98 6 14 0.78 81 4.3 5.3 1 20 498 517 498 519 0.93 7 14 5e-05 0.0052 17.5 0.7 3 23 525 545 524 545 0.97 8 14 0.00033 0.034 14.9 0.2 3 23 565 585 563 585 0.97 9 14 0.0046 0.47 11.3 2.2 1 23 590 612 590 612 0.97 10 14 4.8e-05 0.005 17.5 0.2 2 23 618 639 617 639 0.95 11 14 1.2e-05 0.0012 19.5 4.2 1 23 644 667 644 667 0.97 12 14 0.0024 0.25 12.2 1.8 1 23 673 695 673 695 0.94 13 14 0.00085 0.088 13.6 4.4 1 23 702 725 702 725 0.98 14 14 0.058 6.1 7.9 6.8 1 23 730 753 730 753 0.95
Sequence Information
- Coding Sequence
- ATGACAGAAAGAATGGAAGACAACTTGCTTAATTGCAACGTTGGTAATAATACCAAAATAGACTTTTCAGGATGTAATATCTGTGGTGACCTTCATAAAACTCATGAGTGTTATTTTTTAACCAACTTTCAATATATCCGTGATTCCAAAACAACTACCCGAGCTCGCCAGACCCTACCAAAGGACTTGGAGATCACCCGGATGGCCGATGGAACGACAAGTGTCATAGCCAAGCGCAATTACCAGCGAGGAATGACCTTTGGCCCGTTCGAAGCAAAGCGAAACTGGGCAATGAACCCCGCAATCAACTTCGCAATAAAAATCTTTGGAGAGTCAATCAACGACACTTATTACCTAGACTACTCCGACGAAGACACCAGCAACTGGATGTGCTTCATTCCACCGGCAACTAACGCCAAAGAGCAGAATTTAATTTGCTACCAGTCTAACCAAGAAATTTATTACACTGTCATGAGAGAAATTCCCGTTGGAGAAGAGCTGAGAGTCTGGTACGCGCCCTACTATGCCCAGAAGATGAAGATCCCCTTGCACATCAATGATAGAGCTCTCCCTCCTCTTCAGCCTATAACACCTGATGAAAAAGATTCCGTAGAAATTTTAGACGTAGCCCTGGCTCAAAACTTAGCAAATAGACTTCCTCCGACAAAGCTCGGCGCAAAAGACGAAAAAAAAATTTGGACTTGCCGAATTTGCGCGGTGACTATTAACTCAGTGGTTGCTTACGCCAAGCACCAGATGAATCACTACAAGCCTCTAGTAGGAACTATTTGTATAATTTGTAATAAAAAATTTCCAAATTTTGCTACTCTAGAAAGGCACAGAGTTGATTGTCACAGCTTAGCAAGTAATGAAGAAAATATTGTCGGAATTCCAACAACTGCTAACCAGCAGCAACAAAATGCCGCGACTATTTTGAATATGAGCGAACAATTTATGACCGAAAAAGAAAATCATGATTTGTCTTTACTGGACAGTTCGATTAACACCAATGATTTGCTTCATCATACTGGAAGTCTTATAGAAAATTCATCCCTAAAATCTATTCTCGAAAATCAATGCTTAAATATGAACGTAAGTTCCATGGCTGACTCTATTTTATCCGAGCACATTTCAAGCGCGGATTCTGTCAAGTTCAACGTTGAAGAATTGTCTTCTGAGCTGCTAGACATAACTCCGGATGACGAGGAAAAAATTTCTGAAAATTCAACCGTTAATTTTGATTGCGATATTTGTGGAAAAAAATTCCTACGGGTACATTATCTGTACCGTCATTTGCGCAAACATACTGGAGAATTTATATGCTCGACTTGTCTCTGTGTATTTGCTAGGAAAGAAAATTTAGTATCACACGTTTGTGCAGCAACTAAGAGCCAGAGCAAAGGCTTTACTCGGTACCAGTGTTCATATTGTCCTAAAAACTTTGCAAGAGAAAAATATTTAAAAAATCACATTGCTCGGCACTCAGAGTTTCACCGATGCAGAAGATGTCGGCAAAAATTCTCAAACAAATTCGAGTTGGACTCTCACAAGTGTGGGTCACCCAAGCAAGCTTGTGGCCAGTGTGGGAAGAAATTTTTCAACGCGATTTATCTGAAGCGTCATGTCAAGAGGCACAATGAGGCGCCAAAAGCTCAGAAGAAAAAAAAGCCTGGGGAAGAAATATCTTCGATCTGCGAAATTTGTGGAGATATTTTTAAAAATCTTTGGAGTCTTCAACAGCATCAAAAGTCGCATGGAGAGAAAGCTTACGAGTGTGAAATTTGCAATCGGCGTTTTCACAGAATTGGCGTTTTGAAGGAACACAAATTTACGCATCAGAGCGCTGAGCTGCCTTGCAATGTCTGTGGTAAGAAATTCAAGAGCAAGAGAGCTCTTGATGTTCATGTTCTGCTGCATGGTAATAAAAAGTACCAGTGCGATAAATGTGATAAGAGCTTTTTCCAAAAGTACAATTATTTAAAGCACTACAAACAAATTCATGCTGAAAAAGTCTTGCATAGTTGTCCTCACTGTTCTCTAACGTTCATGAGTGAAAGCGGTTTTAATAAACACGTTGCTGGTCATGATAAAAATCTAGAAGGATTTCCTTGTGATGTTTGCAAAAAGTTTTTTCACTCTCAAGCTAAGGTTGCCAGGCATATGCAAACTTGCCACAGTGGAATTATTTACAGGTGTCCGTTTTGCAAGTCTACTGTCAGGCACAGGCATAGTTTGAGAAGACATTTTGAAAGACAGCACAAGGATCTTACTGATGAATGGAGTAAGCCAGGATTTTACAAACAACTTGAAGAAAAGTCAATTGTTGAAAATAGTGGGAAGAGTCCTGGTGAAGCAGGTACTTCTGATCAAATTTTGGTAAAACAGCAAGTTGCTGAAGATGTTACGGAGCATGTAGAAGCTATTGATGAAGTTGCTAAATCAATTGCAGAACCTGTAGCTGCAGAATTTTCGGAGAGTTTGAATACAGTTGAAGAAATTCAAGGGACTGGGAATATTCAAGATTTGATGCAAGATGTTAAAAGTGTTGACCTGGAAATAAACAGTCAGTTACTTAATGATGTCCCTCAACTTAGAATTGACTCAGATTCACAACTAGCTGAAACGGTCTTGAATAATACTTACATTTTTGGCGAAGATGGCGATTTTGTCTTTTATGTTCTAGATAATAATACTATTTTAGGATCGTGA
- Protein Sequence
- MTERMEDNLLNCNVGNNTKIDFSGCNICGDLHKTHECYFLTNFQYIRDSKTTTRARQTLPKDLEITRMADGTTSVIAKRNYQRGMTFGPFEAKRNWAMNPAINFAIKIFGESINDTYYLDYSDEDTSNWMCFIPPATNAKEQNLICYQSNQEIYYTVMREIPVGEELRVWYAPYYAQKMKIPLHINDRALPPLQPITPDEKDSVEILDVALAQNLANRLPPTKLGAKDEKKIWTCRICAVTINSVVAYAKHQMNHYKPLVGTICIICNKKFPNFATLERHRVDCHSLASNEENIVGIPTTANQQQQNAATILNMSEQFMTEKENHDLSLLDSSINTNDLLHHTGSLIENSSLKSILENQCLNMNVSSMADSILSEHISSADSVKFNVEELSSELLDITPDDEEKISENSTVNFDCDICGKKFLRVHYLYRHLRKHTGEFICSTCLCVFARKENLVSHVCAATKSQSKGFTRYQCSYCPKNFAREKYLKNHIARHSEFHRCRRCRQKFSNKFELDSHKCGSPKQACGQCGKKFFNAIYLKRHVKRHNEAPKAQKKKKPGEEISSICEICGDIFKNLWSLQQHQKSHGEKAYECEICNRRFHRIGVLKEHKFTHQSAELPCNVCGKKFKSKRALDVHVLLHGNKKYQCDKCDKSFFQKYNYLKHYKQIHAEKVLHSCPHCSLTFMSESGFNKHVAGHDKNLEGFPCDVCKKFFHSQAKVARHMQTCHSGIIYRCPFCKSTVRHRHSLRRHFERQHKDLTDEWSKPGFYKQLEEKSIVENSGKSPGEAGTSDQILVKQQVAEDVTEHVEAIDEVAKSIAEPVAAEFSESLNTVEEIQGTGNIQDLMQDVKSVDLEINSQLLNDVPQLRIDSDSQLAETVLNNTYIFGEDGDFVFYVLDNNTILGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380576;
- 90% Identity
- iTF_00379117; iTF_00380576;
- 80% Identity
- -