Basic Information

Insect: Cotesia rubecula
Gene Symbol: PRDM10
Assembly: None
Location: scaffold:22206-27510[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.5e-07 3.6e-05 24.3 3.0 1 23 586 608 586 608 0.98

2 13 0.0031 0.32 11.9 2.3 1 23 617 640 617 640 0.98

3 13 0.0002 0.021 15.6 1.8 1 23 657 679 657 679 0.98

4 13 0.0053 0.55 11.1 0.3 3 23 698 719 697 719 0.95

5 13 0.0007 0.072 13.9 3.0 1 23 750 772 750 772 0.97

6 13 0.64 66 4.6 4.7 2 23 781 802 780 802 0.96

7 13 0.0013 0.14 13.0 0.3 1 23 809 831 809 831 0.98

8 13 0.00012 0.012 16.3 2.1 1 23 838 860 838 861 0.95

9 13 0.00025 0.026 15.3 1.4 1 23 866 888 866 888 0.98

10 13 2.4e-05 0.0025 18.5 4.1 1 23 894 917 894 917 0.96

11 13 0.0017 0.18 12.7 1.7 1 23 977 1000 977 1000 0.97

12 13 3.8e-05 0.0039 17.9 2.4 1 23 1022 1045 1022 1045 0.97

13 13 5 5.2e+02 1.8 0.4 2 13 1070 1081 1069 1084 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.5e-07	3.6e-05	24.3	3.0	1	23	586	608	586	608	0.98
2	13	0.0031	0.32	11.9	2.3	1	23	617	640	617	640	0.98
3	13	0.0002	0.021	15.6	1.8	1	23	657	679	657	679	0.98
4	13	0.0053	0.55	11.1	0.3	3	23	698	719	697	719	0.95
5	13	0.0007	0.072	13.9	3.0	1	23	750	772	750	772	0.97
6	13	0.64	66	4.6	4.7	2	23	781	802	780	802	0.96
7	13	0.0013	0.14	13.0	0.3	1	23	809	831	809	831	0.98
8	13	0.00012	0.012	16.3	2.1	1	23	838	860	838	861	0.95
9	13	0.00025	0.026	15.3	1.4	1	23	866	888	866	888	0.98
10	13	2.4e-05	0.0025	18.5	4.1	1	23	894	917	894	917	0.96
11	13	0.0017	0.18	12.7	1.7	1	23	977	1000	977	1000	0.97
12	13	3.8e-05	0.0039	17.9	2.4	1	23	1022	1045	1022	1045	0.97
13	13	5	5.2e+02	1.8	0.4	2	13	1070	1081	1069	1084	0.87

Sequence Information

Coding Sequence: ATGGATCCAAGGGGCCCTCAAAGAGCGGGGGCCCCTGTAAACCCAACTACCATTGCATCAACAATAGCAGACGTTGATAAATCCTTACTGGACACTGTTGTTGATGACAATTGGCATGGAGTTGGCAGTACAGTTAAAAATAACAATCGTTTGCTGTTTCTCACAGTCGAATATGTGGACGATAATCAGTCGCGAGACTATTCAAAAGTGTTTTCACCATATGAGCAGGTGTCTTTTTATTCACCGAGAGCTCCGTCACCGCTCTCGGATTTCGAGCACAGTCAAGTGAGCCCACTGGACCCGAATATGAGTTCAACGGCGAGATACTCACCTACGCCAGTACCGCAGCTTCCATCTCTATCTTTTCCAAACTCCGTAGTCGTTCTTCCTGATCCACCTTCCCCACTTATTATACCAAGCGATGGTCATGCTAGGGCCAATATAAATAATTATATTTCTAGTCACAATAATACTATTCAAAATGTAGTACAATCCGCTGACAATACAACCATTGATTTTGTCAACACTGATGTTCATGAAGAAACTCTGGTAACTAGTGTTAACGGAGAGTTGATTTTAATGCGAGGGACTAATGTTGAATTAGAGTCTACGTCATCGTCTTCGTCCTCAAGATCTGCCGACACTGCTGCAGCCGGTCCATTGATGCTTGCGGAAATTCCAGAGACTGAGTTCACTTTGACGAGAGACTTTTTGGTGATGCACGACGAGGATCAATTAAATGTTGTTAATTCATTGGCTAGTCAAAGTGGAGGAATTAAAGAGGAGCAGATAATTATTGGTGATCATATGATAGGCGAACATCAAACAAAATTGCTGGAATTTAATAATGACGATCCATTAATCTCAAAGGAACAAGTTATAGGGAAAATTTTAAAGAATAATATCGAGTCTGCAAAAATAATTCCGAGTGTTCCAGCTTCTGGTAAAATAATACTGAGGAAAAATAAAAAACAAATTCGTAATAAAACAACATCAGACTATGAAGAGTGTATCTCTCCGGGTTGCCTAAAATCTGGTGAATGTACTTGTCGAAATGTTCGTACAATTTCTGATCAACCTGTACCATCGAGAGCGGTAGCGACTTTGCCTGGGTCTTATCTTGCAATAAATAAATTGCCATCAACTCCAGGTATTGGTGAACCCATCGGCTATTGCAATTACGGAGTATTTGCTAAAAGGAATATTCGGCAACGTACTCAGTTTGGGCCTATTGAAGGAGTACTGTATCCTTACAACGGAGAGTCTTTTAAAAATGATCAATTACCTTTGCTTTATGAGACAAATCATGGGCATTTACTAAAAGTTGACGTATCAGATGAAAATACTTCTAATTGGATGCGATTTGTTAGACCGGCTTTAACTTATGATGAACAAAATTTAGTTATTTGTCAGCAAGCTGACGGAATTTTCTTTCTCACTACTCGTAATATTTTATCAAAAGAGGAATTGAAAGCGGGTCCAAGTTCACAGTATGCTTCGCGTCGTGGTTTAACTATACTTGAATCTGATTCATCGTTGAAAGATAAAGAAATACCTTATGATGACAATAATATTAATGAGTGGCAGTTTTCAAATTGTGAAGAACCTTTTAAATCCGTGAAAAAATTTGAATCTTTAGACATTCAGTACAATGAAAATGGAGCGGATAACAAACCAGATTCTGAGCAAAATAAATCAAATTCACCGATAAAAAATAAAAAATTATTAAAAGTTGTTGATGGTCAAACAGTACTGTATTCTTGTCCACAGTGCACAAAAGTATTTCCTCGAAGCTATAGTTTAAAGCGTCATATGCACATGCATCTTAGTTCTAAAACTCCCCAAAAGTATGAATGTTCAACATGTGGTGAAAATTTTCTTCATCCTTACAACCGAAGTCGACACATGAAAATATTTCACAATGACGAAACGCGAGAGAAAGAAAACACTTGCGAGAGTTCCAGTGAATATAAATGTAAATCTTGTAATTTGACTTTTAAAAAATTGTCTCTGTTAAATATTCATAAATTAATACACGAGCAGGATCCAAATAAAGATGACGGATCATCAACATCGTCATTGTCATCGGCATGTCCGCAATGTCAAGTTACATTTAACGCTTGGCACGATTTAATAAATCACGTTTCTTCAAAACACGGCCGTGTTAAGTTACCAAAAGTAGCCAATACGTCTAAAGTAAATAAGAACAACAACAACAATAATAATAATCAGGTTACTCCACCGATATACAAATGTACAAAGTGTTATAAACGTTTTGCAACACGAGTTCGTCTTCAACAGCATTTTTTAGTCCACGGCGCAGAAGATCAGAAGCCGCTGCCGTGCAATATCTGTTGCAAAAGATTTATGAATAATTCGGCGCTTTCATGTCATTTGAAAACTCACCGACAGGACAAACAATTGTTTGAGTGTCCGATGTGCCGTAAATTATTTAACCAAGTTCTGATGTTGAAGGAGCACATTGAGACACACAGAGGCGAAGACGGTATATTTAGTTGTCCTCAGTGTCCACGCACATTCACCAAGTACTCGGTAATAAGAAAACATATCAGAGCACACCATTGCGAGCGGAAGCACAAGTGTCAGGTTTGTTCAAAACCATTTCCAACAATAGACAAATTACGTATGCATTTATTGCGTCACTCGGATCACAGGGAATTTCACTGTGCTAATTGTGGAAAACAATTTAAGCGCAAGGACAAATTGAAGGAACATATGACGAGGATGCACAATGCACAGAAAATTAAACGGGATCAATTGACAACACAGAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTGATAATAATAATATTAATGATAATAATAATAGTCAGGCGAAAAAATTTATACCAAAAGTAAATCCGACGGATTACAATCGATTTATTTATAAGTGCCATCAATGCCTAGTGGGTTTCAAACGACGAGGTATGCTTGTTAATCATTTGGCTAAACGGCATCCTGACGTTTCACCGGATTCTATTCCCGAGTTAAATTTACCCATTTTGCGACAAACTCGTGATTATTATTGTCAGTACTGTGATAAAGTTTACAAAAGTAGTAGTAAGAGAAAGGCTCACATTATGAAAAATCATCCTGGAGCAGATTCGGGTTTGCACAATTCTACATTCAGTCAAGCTGTTGGAAGTGTTTCGACAGTTCCGCAAAGTTGTCAGTGGTGTCATAAACAGTATGCCAGTAAAGTAAGCAAAATTACTACAGCATCAACGTAA
Protein Sequence: MDPRGPQRAGAPVNPTTIASTIADVDKSLLDTVVDDNWHGVGSTVKNNNRLLFLTVEYVDDNQSRDYSKVFSPYEQVSFYSPRAPSPLSDFEHSQVSPLDPNMSSTARYSPTPVPQLPSLSFPNSVVVLPDPPSPLIIPSDGHARANINNYISSHNNTIQNVVQSADNTTIDFVNTDVHEETLVTSVNGELILMRGTNVELESTSSSSSSRSADTAAAGPLMLAEIPETEFTLTRDFLVMHDEDQLNVVNSLASQSGGIKEEQIIIGDHMIGEHQTKLLEFNNDDPLISKEQVIGKILKNNIESAKIIPSVPASGKIILRKNKKQIRNKTTSDYEECISPGCLKSGECTCRNVRTISDQPVPSRAVATLPGSYLAINKLPSTPGIGEPIGYCNYGVFAKRNIRQRTQFGPIEGVLYPYNGESFKNDQLPLLYETNHGHLLKVDVSDENTSNWMRFVRPALTYDEQNLVICQQADGIFFLTTRNILSKEELKAGPSSQYASRRGLTILESDSSLKDKEIPYDDNNINEWQFSNCEEPFKSVKKFESLDIQYNENGADNKPDSEQNKSNSPIKNKKLLKVVDGQTVLYSCPQCTKVFPRSYSLKRHMHMHLSSKTPQKYECSTCGENFLHPYNRSRHMKIFHNDETREKENTCESSSEYKCKSCNLTFKKLSLLNIHKLIHEQDPNKDDGSSTSSLSSACPQCQVTFNAWHDLINHVSSKHGRVKLPKVANTSKVNKNNNNNNNNQVTPPIYKCTKCYKRFATRVRLQQHFLVHGAEDQKPLPCNICCKRFMNNSALSCHLKTHRQDKQLFECPMCRKLFNQVLMLKEHIETHRGEDGIFSCPQCPRTFTKYSVIRKHIRAHHCERKHKCQVCSKPFPTIDKLRMHLLRHSDHREFHCANCGKQFKRKDKLKEHMTRMHNAQKIKRDQLTTQSNNNNNNNNNNNNNNNIDNNNINDNNNSQAKKFIPKVNPTDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVSPDSIPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGADSGLHNSTFSQAVGSVSTVPQSCQWCHKQYASKVSKITTAST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00380568;
90% Identity: iTF_00379105;
80% Identity: -