Basic Information

Insect: Cotesia rubecula
Gene Symbol: -
Assembly: None
Location: scaffold:2216-6304[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0044 0.46 11.4 3.8 2 23 105 125 105 125 0.98

2 12 1.7e-07 1.8e-05 25.3 3.0 1 23 131 153 131 153 0.98

3 12 4.9e-06 0.00051 20.7 0.6 1 23 159 181 159 181 0.99

4 12 0.0015 0.16 12.8 0.3 1 23 187 209 187 209 0.94

5 12 0.00043 0.045 14.6 1.9 1 20 218 237 218 240 0.94

6 12 1.2 1.2e+02 3.7 0.5 1 7 246 252 246 262 0.93

7 12 3.3e-05 0.0035 18.1 1.8 1 23 364 386 364 386 0.98

8 12 8.9e-05 0.0092 16.7 1.5 1 23 392 414 392 414 0.99

9 12 9.9e-05 0.01 16.6 0.5 1 23 420 442 420 442 0.99

10 12 0.015 1.6 9.7 0.2 2 23 449 470 448 470 0.93

11 12 0.0011 0.12 13.3 3.1 1 23 479 501 479 501 0.98

12 12 0.12 13 6.8 1.0 1 9 507 515 507 517 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0044	0.46	11.4	3.8	2	23	105	125	105	125	0.98
2	12	1.7e-07	1.8e-05	25.3	3.0	1	23	131	153	131	153	0.98
3	12	4.9e-06	0.00051	20.7	0.6	1	23	159	181	159	181	0.99
4	12	0.0015	0.16	12.8	0.3	1	23	187	209	187	209	0.94
5	12	0.00043	0.045	14.6	1.9	1	20	218	237	218	240	0.94
6	12	1.2	1.2e+02	3.7	0.5	1	7	246	252	246	262	0.93
7	12	3.3e-05	0.0035	18.1	1.8	1	23	364	386	364	386	0.98
8	12	8.9e-05	0.0092	16.7	1.5	1	23	392	414	392	414	0.99
9	12	9.9e-05	0.01	16.6	0.5	1	23	420	442	420	442	0.99
10	12	0.015	1.6	9.7	0.2	2	23	449	470	448	470	0.93
11	12	0.0011	0.12	13.3	3.1	1	23	479	501	479	501	0.98
12	12	0.12	13	6.8	1.0	1	9	507	515	507	517	0.90

Sequence Information

Coding Sequence: ATGAGTGTAAATAATTTTTTATCAAATCCTTTTGTTATTAAAATAGAAAAAATCGAACCTGAGGAAAACGGGGAAAATGGGCCAAAGGAACTCTGTGAAGAGTACCCTATTGATCTTGAAGAGATAAAAGTCGAAGGAGATCAAAATAATACTACTTCTGACGATCTAAATCATGAAATCCTTTTAATGGCTCTGCTGTTGGATTTTCATCCTGAAGATAAAAACTCCGAGAAAATATTCGTCGTTGACGGAATAGTCTGCGAAAAAAACCCTGAAGACGATTTTTCCGCTAAGAAAAGAGACCCAGTGGCCAAATGTGAGATCTGCAACAAAGAATACTCGAAATATTACATGAAAGAGCACCACAGGACGCACACGGGAGAAAAGCGGCACAAGTGCGAAAAGTGTCCCGCTAAATTCGTCCGTAAAAGCAACCTTACCAAGCACATGCTCACTCACACGGGGAAGAAACCTTACCAGTGTAACATCTGCTTGACGAATTTCCGCGGAAAAGCCACCTTGAACAGACACATGATGATCCACACTGGGGAAAGACCTTTCCAGTGTCGGCTTTGTCCGTCTACATTCCGCGACAAGAGCACGTTGGTTGGCCATGAGGCGCTTCATACCGCTGATTATGATTACAAGCCCTTTCAGTGCAATTTTTGCCCCCTTAAATTCCGGTTTAGGAGCAGTCTTAACCAACACAGGTGGATCCACGCCCCGGAAAAACCGTTTCAATGTCATGATTGTGGAAATAATCCCTTAAAATATCATCGCAAGTTTTTTTTTGTAAAAGAATTAATTATAATTGTAAATAATTTTTTATCAAACCCTTTTGTTATAAAAATAGAAAACGGGGAACTCGAGGAAAATGGGGAAAATGAGCCAAAAGAACTCCGTGAAGAGTACCCTATTGATTTTGAAGAGATAAAAATCGAAGGAAATCAAAATACGACTTCTGACAACCTAAATCATGGTAATTCCAATTCTGAAGACGAAAATTCCGAGAAAATTTTCGTCGTCGACGGAATAATCTGCGAAAAAAAGCCTAGAAACAAGTTGTCCAATAAGAAAAGTGACCTAACGTTCAAATGTGATATCTGCAACAAAGAATATTCGAATAAATACTACATGAAGGGGCACTACATGATTCACACGGGACAAAAGCGTTACAAATGCGAAAAGTGTCCCTTGAAATTCCTCCGGAAACGCGGCCTCACCACGCACATGCTCACTCACACGGGAAAGAAGCGCTACCAGTGTGACACCTGCTTGTCAAAATTCCGCGGAAAAGCCAGCCTGATCAGACACATGATGATCCACACGGGGAAAAAACCTTGGCAGTGTCGGATTTGTTTGATGAAATTCCGCGACAAAAGCACGATGGCCGACCACGAGGCGCTTCACACTGCCGATAATGATTACAAGCCCTTTCAGTGCGATCTTTGCCCCCTTAAATTCCGGTACAGAAGCAATCGTAGCCAACACAGGTACACCCACGCCAAGGAAAAACCGTTTCAATGTCACGATTGTGGAAAGAAATCTAATGTATAA
Protein Sequence: MSVNNFLSNPFVIKIEKIEPEENGENGPKELCEEYPIDLEEIKVEGDQNNTTSDDLNHEILLMALLLDFHPEDKNSEKIFVVDGIVCEKNPEDDFSAKKRDPVAKCEICNKEYSKYYMKEHHRTHTGEKRHKCEKCPAKFVRKSNLTKHMLTHTGKKPYQCNICLTNFRGKATLNRHMMIHTGERPFQCRLCPSTFRDKSTLVGHEALHTADYDYKPFQCNFCPLKFRFRSSLNQHRWIHAPEKPFQCHDCGNNPLKYHRKFFFVKELIIIVNNFLSNPFVIKIENGELEENGENEPKELREEYPIDFEEIKIEGNQNTTSDNLNHGNSNSEDENSEKIFVVDGIICEKKPRNKLSNKKSDLTFKCDICNKEYSNKYYMKGHYMIHTGQKRYKCEKCPLKFLRKRGLTTHMLTHTGKKRYQCDTCLSKFRGKASLIRHMMIHTGKKPWQCRICLMKFRDKSTMADHEALHTADNDYKPFQCDLCPLKFRYRSNRSQHRYTHAKEKPFQCHDCGKKSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -