Crub014479.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:242-8831[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.22 23 6.0 0.5 5 23 487 505 486 505 0.95 2 12 0.00051 0.053 14.3 0.8 1 23 542 565 542 565 0.97 3 12 1.2e-05 0.0012 19.5 0.4 2 23 572 593 571 593 0.97 4 12 3e-05 0.0031 18.2 3.3 2 23 600 621 599 621 0.96 5 12 1.6e-06 0.00017 22.2 0.3 1 23 627 649 627 649 0.97 6 12 0.48 50 5.0 1.5 1 23 683 705 683 705 0.97 7 12 4.6e-07 4.7e-05 23.9 1.5 1 23 998 1020 998 1020 0.97 8 12 9.2e-05 0.0095 16.7 0.9 1 23 1027 1049 1027 1050 0.95 9 12 3e-05 0.0031 18.2 0.1 1 23 1058 1081 1058 1081 0.97 10 12 3.1e-06 0.00032 21.3 3.7 1 23 1087 1109 1087 1109 0.99 11 12 9.6e-05 0.01 16.6 6.1 1 23 1115 1137 1115 1137 0.98 12 12 1.8e-06 0.00019 22.0 2.2 1 23 1143 1165 1143 1166 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAATTAATGTCAACTCCGATTAAAAATTCACTAAAACGAGAGTCATCATCTCCAATGAGCCCAGTGATTTATAAAACACCTTTAAAGCAGTTTGAAGCACGGAAAAATTATAACACCAATGATAGATCAAGAGGAATTTCTATGCTGTCTAGTCATTGCACACCACCTTCAGGTTTGACTAAATTTATTGCCAGAAATCCGTTTGATGCTGATCTTAGTAATCGACTTCATATGTCAGTAATCAGTCCTACGATATTCAGCAAGGTGCCGACAAAAACACATGATTCTCCTTTTTCATGGACGATCGATGAGTTGGCGATGTTGAAACCTGTAGCGATTGAAGAATTTTCTCTTCAACAGTCTCACGCTTCCGATCCAGAAGTCGAGAAGCAAGCCCAGGAAGCTATAAATAAATTTTTTAGTGCTAAAGAAATTCATCCGAGCCCATGGAACGAGCGACGAGAGTCATTTAAGCAGCTTATGACTACTCCTGGTAGCTTGATTGAGGAAGTCGATAGTGAAACAACTGAAAAAACTACTAGAGATTGTTGGGCGCAAACAGAATTGTCTCTTCCACCAAATCTACCTCAACATGTCGAAGATGCTCTGAAACCATACTTTACTTTTACACAAGACCAGCAGGTAGATAATGACGAAGCCAACAGCTCGAGTAACAGTTCTTTGAGGAGAAAATTATTCTTTAACCATGACGATTCAATAGAAGATGACTCTGAGTGTTCGCTGATTTTGTCCCCGTCTAAAATAAATTCTAGTCCTCCTCGCAGTGGAATGATGGCTCATGGAACGCTTATTGGGGAAGGATTAAGTAATATGCAGAGAACTTATGATACATCATTTAGACCAGATAAATTAATTTCACCACCGGACATGTCGCCTATATGTAACCCATCAAATAATTTAGCTAACAATAGTCTTCGGTCACGTAAATCTGTAACGCGACTTGATTTCTCTGCGCATATGAGCGTTGACAGCTCGTACTTGGAGGAAAAAGAAAATAATAATCCTCAATTGACTGCTAATCAAGAAACTCTTAATGATACAATGGCTGATTCAGTAATTGAAAGTAAAGAGTACAATCAAAACGAAACGGTTGAAATGGTTTCTTTGATTCAAGAGACTACACCACAAAAACAATCAACTAAAATTGACAATGTTATTAAATTTAAAGATTCAGTGGATTGGTGTAAGAATGTTACTAATGAAAGCTACAAAGGACGAAGAAATTTCACATCTGGTGGATTTTCGGATCAGAGCACCAGTGCCTTTACTTCTGCACAAGACACGGGTTATCAGACTTACAGTATGAACAATACTGCTAATACTAATACTACAAATAACCGGAGTTTTACTCCTGTCAAGAAAGGGTTTAATTGGGACGATCGTCACACAGGAATGTCATCTGTCAGTGAAATAAGACTGTCCGATTGGCAGGAATGTGGAAATTTTTATAGAAGTGAACATGAGTATTTAAATCACATGCAATTGCACTGGGGAGAAGTTTGGAAATGTTTGCAGTGTGATGACAAATGCACGTTGTTTAAATCACAAGTTGGATTAAAGGAACACGAGGGCTTGTATCACGGTTCGGATAAACCATTCAGATGTTCAAAATGTAAGCTAGTATTTGATCGAGTTTCGCAGCTGGATTATCATGTACGGAGCATTCACTTGGGTGAAAAATCTCAAGTATGCCAGCTGTGTGGAAAAGGATTTTTTCGCAAAGCTGACTTGAAGACACATCTCAATGTTCATCTTGGTACTAATCAATGCATTTGTGAGTTTTGTGGACGTCAATTTAATCATATTTCTAATTTGATTCGTCATCTCAGGATTCATGAAGGAACTAAACCATACCCATGTTCTGTTTGCGGTAAGCGATTTACTCAAGTCAGTTCATTGGCAAGACATAAATTAATTCACGAACGAAATAATGAAACTACAAATGATGAACATGGACAAATAAGTTTTCAGACTGTAACGAAAAATAAAACAGCTAAACGTAAGTCTGTAAAACGTCATCATTACTGCCAAACATGCGGCGACAGTTTTCAGCTGATGGTGCTTTTAAAAGAACATGAAAAAACTCATAAACCATTACCAGAACCACAGAAAGCTTATCAGGTGTCGCAGAATGAAGATAAAACAAGAAATGCATGTTTTAATGCTGACAATTTTTTGGAGCGTATTGATTCAGTCCGTGATGAAAGTATTGACATTTCTGATATCCTAAGTCCTTATTGTGATGAATTGGAATTGCCAACGACAGATCTTATGCAGCGTGAAGACGTCGGAACTGAAATGGCTAAAAAATTCACAAATTTAGAAATTTCAAACAGAGAAATACGTAACAATAGTGTTAATAATCCAAACTGTGTTCATATAGAGAGAAATCAATTTTTAATAGAAGTTTGTGAGTCTGATTATTTAAATAATTTAGAACTTAATTCATTGGAGCTACATGATAATGTGATATTACCCGATAATCATTTTAATAATATAAATTACTGCGTTGATAAATCATACACGCTGCCGGTAGCAGTTGTTGATAAAGATTTAAATGAGCAGTGGGATTTGCAGTCGACAGTTAATTCAGTACTAGAACAATTAAAAGATACCAGCATTAATTTGTTAGAAAATTTGCAACTACAACATATAGATCAAAATCCCGAAGGTTATCGCGGGTCCGATGACCTAGTCGCAGATTTTAACAACGAGGAAGCTCAGACTCAAACACCGTTGGTACGGTTGGTACAAAATGAGGAAGGAGAACAGTTTTTTGAACTAGTCCGTGATACAGTTCACTTTGAAAGTCATGATAATAATTTACAAAATCAAAATCAAAATATTTTCTCAGGAGTCACTAGTCAAGCGATGGCTTCCGTGACTGCTGATAGCGTTCGTAAAAAACGGTGTAAGCCAAAATCGCAAGGTAAGTTGCGGATAAAAGATTTGGTAAAACCGAAGTACCGATGCACTATTTGCAATAAATCTTTCTCTTCGACTTCAAACTTGAAGCAGCATGCAGGAACTCATTCTGTTGATCAACAAAAATTCCAGTGCAAACAGTGTGGAATTTCTTTTGCTTGGAAATCGACGCTTAATAAACATATTGCTGGTCATCATCGGCCTGATGGACCTTTGAAGTTTGTTTGTGAGATTTGTCCAAAGGTTTACAGTACTTTGTCTCAAGTTAATGAACACGTCAAGAGAGATCATTTGAAGGAACGTAACTTCAAATGTTCAGAGTGTGAGAAATCGTTTTTTAAGAAATTTGATTTGAAGTCTCACATAAGAACGCACACAAATGAACGACCGTATGCTTGTAAAACTTGTGGCAAAAGCTTTCATCACCAAAGTCACATCATTCGACATGAGCGAGTTCATTCTGGTGAAAGACCTTACACGTGCGATATTTGCAAACAAAGTTTTAGTCAACCTGGATCACTTAAAGTTCATAGGCAAAGGCATCATTTGACAAAAGTTGATATTCTTGATTATCAAATTGATGAAGATGATCCCCTAGCTCTGAATGCTACTTAA
- Protein Sequence
- MEELMSTPIKNSLKRESSSPMSPVIYKTPLKQFEARKNYNTNDRSRGISMLSSHCTPPSGLTKFIARNPFDADLSNRLHMSVISPTIFSKVPTKTHDSPFSWTIDELAMLKPVAIEEFSLQQSHASDPEVEKQAQEAINKFFSAKEIHPSPWNERRESFKQLMTTPGSLIEEVDSETTEKTTRDCWAQTELSLPPNLPQHVEDALKPYFTFTQDQQVDNDEANSSSNSSLRRKLFFNHDDSIEDDSECSLILSPSKINSSPPRSGMMAHGTLIGEGLSNMQRTYDTSFRPDKLISPPDMSPICNPSNNLANNSLRSRKSVTRLDFSAHMSVDSSYLEEKENNNPQLTANQETLNDTMADSVIESKEYNQNETVEMVSLIQETTPQKQSTKIDNVIKFKDSVDWCKNVTNESYKGRRNFTSGGFSDQSTSAFTSAQDTGYQTYSMNNTANTNTTNNRSFTPVKKGFNWDDRHTGMSSVSEIRLSDWQECGNFYRSEHEYLNHMQLHWGEVWKCLQCDDKCTLFKSQVGLKEHEGLYHGSDKPFRCSKCKLVFDRVSQLDYHVRSIHLGEKSQVCQLCGKGFFRKADLKTHLNVHLGTNQCICEFCGRQFNHISNLIRHLRIHEGTKPYPCSVCGKRFTQVSSLARHKLIHERNNETTNDEHGQISFQTVTKNKTAKRKSVKRHHYCQTCGDSFQLMVLLKEHEKTHKPLPEPQKAYQVSQNEDKTRNACFNADNFLERIDSVRDESIDISDILSPYCDELELPTTDLMQREDVGTEMAKKFTNLEISNREIRNNSVNNPNCVHIERNQFLIEVCESDYLNNLELNSLELHDNVILPDNHFNNINYCVDKSYTLPVAVVDKDLNEQWDLQSTVNSVLEQLKDTSINLLENLQLQHIDQNPEGYRGSDDLVADFNNEEAQTQTPLVRLVQNEEGEQFFELVRDTVHFESHDNNLQNQNQNIFSGVTSQAMASVTADSVRKKRCKPKSQGKLRIKDLVKPKYRCTICNKSFSSTSNLKQHAGTHSVDQQKFQCKQCGISFAWKSTLNKHIAGHHRPDGPLKFVCEICPKVYSTLSQVNEHVKRDHLKERNFKCSECEKSFFKKFDLKSHIRTHTNERPYACKTCGKSFHHQSHIIRHERVHSGERPYTCDICKQSFSQPGSLKVHRQRHHLTKVDILDYQIDEDDPLALNAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -