Crub003790.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:600-4251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.1e-06 0.00032 21.3 1.0 1 23 80 102 80 102 0.98 2 24 0.0024 0.25 12.2 1.7 1 23 125 148 125 148 0.94 3 24 0.0003 0.031 15.1 0.8 2 23 155 177 154 177 0.96 4 24 0.00015 0.015 16.0 0.6 1 21 196 216 196 217 0.95 5 24 0.0028 0.29 12.0 0.1 3 23 310 330 308 330 0.95 6 24 0.00016 0.017 15.9 2.6 1 23 336 359 336 359 0.96 7 24 5.8e-05 0.0061 17.3 0.1 1 23 417 440 417 440 0.96 8 24 0.0024 0.25 12.2 0.5 1 23 446 469 446 469 0.96 9 24 0.073 7.6 7.5 1.9 1 23 482 504 482 504 0.97 10 24 2e-05 0.0021 18.7 1.1 3 23 554 575 553 575 0.96 11 24 5.2 5.4e+02 1.7 0.2 1 21 606 626 606 629 0.69 12 24 0.0026 0.27 12.1 1.2 2 23 636 659 635 659 0.93 13 24 1.5 1.6e+02 3.4 0.0 2 23 668 690 668 690 0.84 14 24 0.15 15 6.6 0.0 2 23 697 719 696 719 0.94 15 24 6.4e-06 0.00067 20.3 1.2 1 23 727 749 727 749 0.98 16 24 0.1 11 7.1 0.4 2 23 784 807 783 807 0.92 17 24 0.0001 0.011 16.5 3.3 1 23 810 833 810 833 0.97 18 24 0.00047 0.049 14.4 0.5 2 23 840 862 839 862 0.95 19 24 0.00079 0.082 13.7 5.2 1 21 888 908 888 909 0.95 20 24 0.0013 0.14 13.0 1.8 2 23 923 944 922 945 0.93 21 24 0.18 18 6.3 1.1 1 23 948 971 948 971 0.94 22 24 4.3 4.4e+02 2.0 0.1 9 23 978 992 976 992 0.88 23 24 0.48 50 5.0 0.2 2 23 999 1021 999 1021 0.95 24 24 2.6 2.7e+02 2.7 0.0 2 23 1028 1050 1027 1050 0.91
Sequence Information
- Coding Sequence
- ATGGGACCTGATTCCTTAGTGAAAAAAAATCTACTTGACTCAAGCTTAGAAGATGGCGAGGACAGAAAATACGACGAGGAGTACGAAATGGACATGGAGACAAACCCAAGTGATTTTTTGGAAATGCCCCCAATGGTAACAGAAGACCCAGAAGAGCCCGACCCGCGCCTGCAGAACTCATCTCGCCAGCTCATCTCGCCAGCGTTATTCCAACACAAATCCGAGCACCATGAAGTCTACGTATGTTCATTATGCAACAAAGCCTTCAGCTCGAAAGGACACCTGTCACTGCACGCGCGAATTCACGCCGGAGCCGGAGACGTAGTGGGTGAAAAGGTAATCACAGACGACCACACATCCTTCAAGCGTCTGTACCAATGCGACCTCTGCAACAAATCCTACTCGACAGCCAAACACCGATGGGGTCACGTGTCTTCAAATCACCGAGGACACCCAGCAGTAACGTGTCAATACTGCTCACGTTTGTACTCGACACGTGGAAATCTAATGGACCACATAAAATCCCGACACACTGGCCAGCCTCCGCCTCCTAAACTCGGTGTCTATGTCCCCTCGGACAATCGATTCCAGTGTAACACGTGCCCGAAGATGTACACGAACATCACCGACTTGAACAAGCACAAAAAAGTCTGCACTGGAATCCGCGAATCAATAAGCCTGCTGCTAAAAAAGAAGGGCAAGAGTCTTATGGACACCTCAGAAGCTTCGAGCTTCGAGTCTGACGAAGACAGCAAAGATTACCGCACAGCCGAGGCTAAATTATCAAAAAATCCCCAGCTGACTATTTTAAAGCAAGCTTTGACTCGCGGAACCGAAGGACTTAAGCGCGACGACCGCGATCCTTATAAATCACTAAGAGTACCTCAAGTTGACGCTCAAGTTGATTCAGAACCCAAGAGATGGTTTTGCGAGACTTGCCCGCAGTCTTTTACTTCAATTGAAGCTCTAAAAGACCACGAGGTCACTCACGAGTCCGACAAACCTTTCGTTTGTCTTTTATGCAAAAAACATTTCACACTAAAATCCTCTTTAAGCCGGCATATTATTTCTTCCCACGGTGTGGATCCAACTCCGATGTTAGACGATGAAAAATGTCTGAAAAAAAAATTGCCTGTAAATAATCTACGTGAAGAAATTAAAATAAAACGCGAGCCTTGTTTTTCTCCTGTAAATGCTGAAGAAGAAGATGAAACTCAGCAGCAAGATATGATTGAAATAGAAACAGTATTTGTATGTGAAATTTGCACACGTGATTTTAACGACCGAGCTTCTTTATGGCTGCACATACGCGCTACTCACAAAGAGTACGCAGCATTTGCCTGTGGTGTGTGTTTAAAAATCTGTACGGACAATGATCAATTGTTGAACCACGTAAATATGTACCACGGAGCTTCTAAGCTTCAGATATCAGAACAAAGGCGCTACAGTTGTACCATTTGTGGCAGACAGCATGACTCAAGGAAGAAATTAATGACCCACGTGTCGATTCACAATATAGATCCTTCCTATGATCCAGCTAACTTTGTTCAATTAAACAGCGGGTATTACAGCAATGAGAATATTAATGACACCACTCAAGATCATGTTAGATTAAATTCTACTGTTGATTTTGACCATGAGGACGGTGAGAAGGTCGATTGTTTTATCTGCTACAAGTCTTTTCCAAATGAAGATCACTTAATTCGACACCAGCGTAACGCGCACAAGGAACAGACTCCTTTTGCTGATCATCACCTTGCTAATAATTCCAGTCCTGCAAATCCAAATGGGAACAAAGCGCAGTATCACTTATTTTTCGTGTGTGAAATTTGCGGGAGCTCTCATCCAAGTAAATGGGAGCGCTGGTTACACGTCAGCAGTGTTCACAGCTCAGAAGCTCAGATTAGATGCGAGCGTGAAGACTGTGGTAAAATATTTTCTACCAAGTCGCTTAAAAATGAGCATGCTCAGCATCATATCTTGCAAGGCGCGTCGCCTAATACTTGTGAAATTTGTGGAAAACTTTGGGGCAGCCGGGTCGATTATTGGAAGCATGTTATGGGAGTTCATTCCGACACTGTTCCTCTAATTTGTGGTGTTTGCTTAAAAGTATTCCCGGATGTTATTCAATTAAGCGGTCATGTTAAAAGCAAGCACTGGCCGCTGACAAACGGGGACTTTAGTTGCGACATTTGCGGTCGTCCTTATTCAAATAAATCAAAAATGTCGCGTCACCGTAAAATTCACGGGTTAGAAGTTGAAAATTACAGCAATGGCGTTGTTAACGAGTCAGTAAGTGAAGTCATACCTGCTAGTACGTATGAAAGTAATGCAACTGAGGTTGATTTGACTTGTGAAATGTGTACGGACTTGATATTCCCAAGTTGGGAAGATTTGTGCCAGCACAGAAGACTAATCCACGGATTATTCCCGTGTGATTTGTGTAACAAATGTTACGGAAGGACTTCTCACCTCTGGAAGCATGTTAATAGAGTCCACAAAGGTCACAAGGATGTTACTTGCAAGTACTGTTTAAAAACGAGCGCTTCTAAGGATCATTTAGCGGCGCACATTGCTAAAATTCACCGCTACGAGCCCGAAAGCAAGAAAGTTCTTAAAGAGACTAATTATAAAGCCCCCGTTGTGGAAGAAGATACGATTCATCATTGCGAAAAGTGTAACAAAGCTTTCCACAAGCGGTATTTATTGAAGAGACACATGAAAGGCTGCCAAAATTATCGGAAGGATCCCGGAGCATTGTTGACCCGTTGCAGAGCTTGCGAGAGAATTTTTAAGGACCGGGCGAGCTTGCAGAAGCACATTGAGAATCATCACAGTAGTTACACGTGCCATTTGTGTAATGAGACAATTACTTCCAAGCTTGGGATCATGACGCACAATCGTGTTAATCATATGAACCATCCAGACTTGACTTGTGACCATGCAAGCTATCTTGAAGCTCATCGGAAGGATCATAAATATCACTCGCCGAATGTTTGCGATTTTTGTGGAGATACtgtggagaataaattgaaattaaaaatgcatatTTTGTCACTGCACAGGAATGAAATTGGAGTTTCTTGCGGGGTTTGTTTGATACCGATGAAAGATCCACAGGAGTTGAAGAATCATGTGGAGAGTGTTCATCCTGGAGTTTTGTTGAAGGCAAATACTTGCCAG
- Protein Sequence
- MGPDSLVKKNLLDSSLEDGEDRKYDEEYEMDMETNPSDFLEMPPMVTEDPEEPDPRLQNSSRQLISPALFQHKSEHHEVYVCSLCNKAFSSKGHLSLHARIHAGAGDVVGEKVITDDHTSFKRLYQCDLCNKSYSTAKHRWGHVSSNHRGHPAVTCQYCSRLYSTRGNLMDHIKSRHTGQPPPPKLGVYVPSDNRFQCNTCPKMYTNITDLNKHKKVCTGIRESISLLLKKKGKSLMDTSEASSFESDEDSKDYRTAEAKLSKNPQLTILKQALTRGTEGLKRDDRDPYKSLRVPQVDAQVDSEPKRWFCETCPQSFTSIEALKDHEVTHESDKPFVCLLCKKHFTLKSSLSRHIISSHGVDPTPMLDDEKCLKKKLPVNNLREEIKIKREPCFSPVNAEEEDETQQQDMIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICTDNDQLLNHVNMYHGASKLQISEQRRYSCTICGRQHDSRKKLMTHVSIHNIDPSYDPANFVQLNSGYYSNENINDTTQDHVRLNSTVDFDHEDGEKVDCFICYKSFPNEDHLIRHQRNAHKEQTPFADHHLANNSSPANPNGNKAQYHLFFVCEICGSSHPSKWERWLHVSSVHSSEAQIRCEREDCGKIFSTKSLKNEHAQHHILQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSGHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEVENYSNGVVNESVSEVIPASTYESNATEVDLTCEMCTDLIFPSWEDLCQHRRLIHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCKYCLKTSASKDHLAAHIAKIHRYEPESKKVLKETNYKAPVVEEDTIHHCEKCNKAFHKRYLLKRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRVNHMNHPDLTCDHASYLEAHRKDHKYHSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPQELKNHVESVHPGVLLKANTCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -