Crub007359.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:464-2332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5e-05 0.0026 18.4 0.9 1 20 46 65 46 67 0.96 2 20 0.0014 0.15 12.9 1.5 1 23 74 96 74 96 0.98 3 20 8e-06 0.00083 20.0 0.8 1 23 112 134 112 134 0.98 4 20 3.9e-05 0.004 17.9 2.8 1 23 140 162 140 162 0.94 5 20 0.0001 0.011 16.5 0.8 1 23 168 190 168 190 0.97 6 20 2e-07 2.1e-05 25.1 1.4 1 23 196 218 196 218 0.98 7 20 1.1e-05 0.0012 19.5 0.2 1 23 228 250 228 250 0.98 8 20 0.00047 0.049 14.4 0.1 2 23 256 277 255 277 0.96 9 20 0.00039 0.04 14.7 0.3 1 23 283 305 283 305 0.98 10 20 2.2e-06 0.00023 21.8 1.6 3 23 313 333 312 333 0.96 11 20 2.1e-05 0.0022 18.7 0.3 1 23 339 361 339 361 0.98 12 20 1.5e-05 0.0016 19.2 0.3 1 23 365 387 365 387 0.98 13 20 5.2e-05 0.0054 17.4 0.7 1 23 393 415 393 415 0.99 14 20 1.2e-05 0.0013 19.4 3.1 1 23 418 440 418 440 0.98 15 20 7.4e-06 0.00077 20.1 2.1 1 23 446 468 446 468 0.98 16 20 0.00054 0.056 14.3 1.2 2 23 475 496 474 496 0.97 17 20 2.2e-05 0.0022 18.7 4.2 1 23 502 524 502 524 0.99 18 20 0.00016 0.016 15.9 0.9 1 23 530 552 530 552 0.97 19 20 0.0003 0.031 15.1 3.7 1 23 558 580 558 580 0.98 20 20 0.012 1.2 10.0 1.0 1 23 586 608 586 608 0.96
Sequence Information
- Coding Sequence
- CGGCTTCAAAGAGGTAAAAAGAGCCGCCAGGTTTTACCTTCCAGTAAGAGCAGCTGTACAACAAAATTAAGTTCAAAGTTCCACGTGGAGAAGTTAGAGGAAAAACACATTCGAACTCACAGTGATTTAAAATCGTTTGTGTGTGAAGTTTGTGATGTTAGATTTCCTCGAAAATATCATTTACACAGACACATTTACGGTGATAAGAATAAAAAAATTTTTGAATGCGAGATTTGTTTAAAAAAATTAGCAAAAAAATGCGGATTGATAAAACATATTAAAAGTCATTCGGAAAATAAAGACTGTCTAGTCAAAAAAAATAACAAGTCAGTTTTTCAATGTTCTATTTGTTTATCCAAATTTGCGAGTTCAAGCAATTTAAAAAGACATGCGCGCATTCATACGGGGGAAAAACCGCACGCGTGCAAGATTTGTTCCGTAAGATTTTCTCGGAAAGATTATTTGCAGCGTCATCTTCTTTTTCACGAAGACGAATCTTTGTTTGAGTGTCCCATTTGTTCAGAAAAATTTGAGCACAGAGCTGAGCTAGACAATCATAAAAGAGATCACTTGAAGAAGAAGCCTTTCAAGTGCAATGATTGTTCCAAAACATTTATTAATGCTAATAACTTGAAAAGACATCGTGAAATTCACAAAGACAAAAAACTAAACCGTAAAATATTTGAGTGCGATGTTTGTTCAACTCAATTGTCTAGAAAAGATAATTTGATCGCTCATTTAAGAGTTCATGAAAAATTTCCGCTTGTATGCGAGGTTTGTTCGGAACAATTTGTTAAAAAAGTTGATCTAAAAGAGCATGTGAAAATTCACATGGATGAAAAACCTTTTATGTGTAAAGATTGCTTTAAATTATTTGCTGAAAGCGAAAAGTTAGAAGAGCACGTAAGAATTCATGATAAAGAAAAGCCAAATATTTGTGAGATTTGCTCGAAAAGATTCAAACGAAATGACCAATTGCTTAAACACATGCAGTTTCACACTAAGGAGAAACCATTTGTGTGCGAAGTTTGTTCGGTAAGATTCGCTGATAAAAGATCACTTGTTAATCATTTAAAAACTCACAATATAGCTTTTAAGTGCAATATTTGTTCAACGGAGTTCATTCGGAAAATTGATCTTGAAGATCATATGGAAAATCATATGAATAAAAAGTCATTTAAATGCAGCAATTGCTATGTGGTATTTTCTGAAAGAAATGAACTGGAGCGCCATCTTGAAACTCACGTTAAATATCAATGTCCGATTTGTGGGAAGAAATTTGACCGCAGGGACAGTTTGAGTTGTCATAGACAAACTCATGTTGAAAAAAAATCTTTTGAGTGTGATAATTGCTCGAAAAAATTCAATCGGAAATCTAGTATTGTTAATCATATGAAAAGTCATTTGAAAAAAAAATTGATGAAATGTCTTTATTGCTCGGAGAAATTTTTGCAAAAGAATCAATTAGAAAGCCACATGAGGATTCATACAAAAGAAAAGCCGTTTAAGTGTATGGATTGTACTGCGAGGTTCAAACGAAAGGATCATTTAGATAGACACTATCGAATCCATACTGGGGAAAAACCCTTTGTGTGCAAAATTTGTAAAGCCAAATTTTATCGGAAAGATTACTTGGCTGATCACGAAAAAGAACATGAGGAAGATAAATCTTATAATTGTGAGATTTGTTCGGAAAAGTTTGTTCGGAGAAAGGATTTTTGTACTCATGTTAGAAATCATGAACGGGAAAAGACGTTCAAGTGCATATATTGCAAGGTGAAGTTTTTTAATAATGAGGAATTGAAGGAACATGTTACGATTCATGCTGAAAGAGTTTTTATAAGAAGCTTGCAGGTTTTTCAGTACTAA
- Protein Sequence
- RLQRGKKSRQVLPSSKSSCTTKLSSKFHVEKLEEKHIRTHSDLKSFVCEVCDVRFPRKYHLHRHIYGDKNKKIFECEICLKKLAKKCGLIKHIKSHSENKDCLVKKNNKSVFQCSICLSKFASSSNLKRHARIHTGEKPHACKICSVRFSRKDYLQRHLLFHEDESLFECPICSEKFEHRAELDNHKRDHLKKKPFKCNDCSKTFINANNLKRHREIHKDKKLNRKIFECDVCSTQLSRKDNLIAHLRVHEKFPLVCEVCSEQFVKKVDLKEHVKIHMDEKPFMCKDCFKLFAESEKLEEHVRIHDKEKPNICEICSKRFKRNDQLLKHMQFHTKEKPFVCEVCSVRFADKRSLVNHLKTHNIAFKCNICSTEFIRKIDLEDHMENHMNKKSFKCSNCYVVFSERNELERHLETHVKYQCPICGKKFDRRDSLSCHRQTHVEKKSFECDNCSKKFNRKSSIVNHMKSHLKKKLMKCLYCSEKFLQKNQLESHMRIHTKEKPFKCMDCTARFKRKDHLDRHYRIHTGEKPFVCKICKAKFYRKDYLADHEKEHEEDKSYNCEICSEKFVRRKDFCTHVRNHEREKTFKCIYCKVKFFNNEELKEHVTIHAERVFIRSLQVFQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380539;
- 90% Identity
- -
- 80% Identity
- -