Crub012867.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- zfh1
- Assembly
- None
- Location
- scaffold:231-3852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0014 0.15 12.9 0.5 1 23 29 51 29 51 0.92 2 23 9.8e-08 1e-05 26.0 1.1 1 23 57 79 57 79 0.99 3 23 5.3e-07 5.5e-05 23.7 0.1 1 23 85 107 85 107 0.98 4 23 0.00019 0.02 15.7 1.7 2 23 114 136 111 136 0.93 5 23 1e-05 0.0011 19.7 6.7 1 23 141 163 141 163 0.97 6 23 4 4.2e+02 2.1 0.7 1 9 172 180 172 182 0.90 7 23 1e-05 0.0011 19.7 6.7 1 23 185 207 185 207 0.97 8 23 5.4e-06 0.00056 20.5 1.5 1 23 216 238 216 238 0.98 9 23 4.2e-06 0.00043 20.9 0.9 1 23 244 266 244 266 0.97 10 23 4.6e-05 0.0048 17.6 1.3 2 23 273 294 272 294 0.97 11 23 3.1e-06 0.00032 21.3 3.3 1 23 300 322 300 322 0.98 12 23 0.34 35 5.5 1.0 1 23 394 417 394 417 0.91 13 23 5.4e-06 0.00056 20.5 0.2 3 23 425 445 424 445 0.97 14 23 1.2e-06 0.00013 22.6 3.4 2 23 475 496 474 496 0.95 15 23 0.00011 0.012 16.4 4.6 2 23 502 523 501 523 0.97 16 23 0.00029 0.03 15.1 0.1 1 23 528 550 528 550 0.98 17 23 1.5e-06 0.00016 22.3 2.6 1 23 558 580 558 580 0.98 18 23 0.6 63 4.7 2.5 3 23 588 609 586 609 0.94 19 23 0.00012 0.012 16.3 0.6 2 23 621 642 620 642 0.96 20 23 5.7e-06 0.00059 20.5 2.0 1 23 648 670 648 670 0.96 21 23 2.9e-08 3.1e-06 27.7 0.2 1 23 676 698 676 698 0.98 22 23 2.3e-07 2.4e-05 24.9 0.9 1 23 704 726 704 726 0.98 23 23 0.00052 0.054 14.3 1.7 1 21 732 752 732 753 0.96
Sequence Information
- Coding Sequence
- TTGTTTCACTCGGAAAAAAAGCCGGAGTTAATAAACAATAAAAGCCCAGGGATTGAAAAGAAGCTAAAAGAAGAAGAAAATTTCTACGTGTGTAAAATCTGCAACAAGCAGTTCAAATTAAAGAACCTGTTCGAGGGACACTTGGTGGCACACAGCGACTTGCGACCGTACCAGTGTGACATCTGCAACAAGTCCTTCAAGCGCACCAGCACCTTAGCAGTGCACCGGAGGATCCACACCCGGGAGCGGAACTTTATCTGCGACGTGTGCGGCCGCGCTTTTATCCAGGCGTCCCAGTTGGCGATGCACCAGCGCAGACACTTCGAGAAGTACATCTGTTCGTGCGAGCTCTGCGGCAAGGGATTCTTCACCAACGCGGAGCTACACGGCCACATGAACATCAAGCACGGCGCCAAGGAGCACGTGTGCCACCACTGCGGAAAGTCCTTCCCGAACAACCACACACTGGTCAGGCATGCCAAGGTCCACGACCCGGACTTCAAGCCCATCAAGCACCAGTGCGAGTTCTGCGGAAAGCACGGCGCCAAGGAGCACGTGTGCCACCACTGCGGAAAGTCCTTCCCGAACAACCACACGCTGGTCAGGCATGCCAAGGTCCACGACCCGGACTTCAAGCCCATCAAGCACCAGTGCGAGTTCTGCGGGAAGGTTTTCGCGTATAAGAACTCTTTAATGGTCCACGTCAAGTCCCACACTGGAGAGAATAAATACGACTGTCATCTCTGCGGAAAGTCAGTCTCTTCCAGAGGCTCGCTCCAGGACCACTTAAGGCTTCATGGCGGAGAGAAGTCTTTGGTCTGCGATGTTTGCGGCAAGGCTTTTCACAAAAGGACCACCCTGGTGGTCCACAAGCGCACGCACACTGGAGAAAAACCCTACAGCTGTGACACCTGCGGGAAGTCGTTTACTCAACACTCGACCTTGGTTATTCACAAACGGTATCATACTGGGCAAAGACCTTACCAATTCACTCAGCCTCCCAGCTGCAAGATCTCTCCGTATTACCCGATTAATGAAGATCTAAGACTGACAAACACTCCAGAGCTTCAAAAAGAAAAGATACTCGTAGACCCTCTGTGCTCTTCAAACTCGGAGGTCTCCTATAAATCAAAGCTCCGGGAAGACAACGAGGATAATCAAGAAGACATGCCTCTAGCTTACTACTGCAAGCCCTGCGCGCGGTTCTTCGCCTCGCAGCCGACCTTTGAGAAGCACAAGGCCGAATTTCACGGTAGACTCACAAAAAACGCTTGCGAGGAGTGCGGGAGGGTCTTCAGGACCTTGGCGAGTCTTAAAAATCATGCCAAGAGCCACCGGGGGAAGATTGAGTCCGATTTGGAGGGCAGCGACAAGGAAGTCGATGGGAAAATCGAGGGAGAGACACGGACCAGGAGAGAATTGGTTTGCAATACTTGCGGCAAGGTCTTCCGGCATAGAAGTAATTTTAAGAAGCACTTGGTGAGACACACGACCGGAGACCTGACTTGCAAGCACTGTCCTAAAAAATTCAGGCTCTACCGTGACTTGACTCGCCATGAAAAGACTCATTTTCTGCCCAGTTACATGTGCAAGGAGTGCGACTACGAGACAACTGTCCTGGCTGCTCTTACTGTCCACATGTTGAAGCATACTGATAACGCAGGGCTGCCTTACAAGTGCAACGACTGTGAGAAACATTTTAGGAAGGCCAGCGACCTCCAGGAGCACTACAACATCCACTCCGGGGACAAGCCATTCGGCTGCGAGCAGTGTGACAGCTCTTTTTACCTCAGGCGCCAGCTCTCCGCTCACTGCCGACGTCTTCATCCAGAAATTAAAGCCAATAAGGTCACTAGTACTACTTGTGATATTTGTGGAAGGGTTTTGGCGACAAAGAGGTCGCTATTTAGGCACAAGGAGAGCCACAATCCGACGAAATTGTATCTTTGTGATTTTTGTGGGAAGAGTTTGAGCAGTGCGGAGCACTTGAAGAAACACAGGCGGATCCATACGGGAGAGAAACCTTATGTTTGTGATATTTGCGGAAAAGGGTTCACTGATTCGGAGAATCTTAGGATGCATCGCAGGGTTCACACTGGAGAGAAACCTTACAAGTGCGATCAGTGTCCTAAGGCTTTTTCGCAGAGGTCTACGTTGACTATTCATAGGAGGGGACACACTGGCGAGAGACCTTATGTTTGTCAGATTTGTCACAGGGGATTTTCGTGTCAGGGAAATCTTACTGCTCATCAGAAATCTACCTGT
- Protein Sequence
- LFHSEKKPELINNKSPGIEKKLKEEENFYVCKICNKQFKLKNLFEGHLVAHSDLRPYQCDICNKSFKRTSTLAVHRRIHTRERNFICDVCGRAFIQASQLAMHQRRHFEKYICSCELCGKGFFTNAELHGHMNIKHGAKEHVCHHCGKSFPNNHTLVRHAKVHDPDFKPIKHQCEFCGKHGAKEHVCHHCGKSFPNNHTLVRHAKVHDPDFKPIKHQCEFCGKVFAYKNSLMVHVKSHTGENKYDCHLCGKSVSSRGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCGKSFTQHSTLVIHKRYHTGQRPYQFTQPPSCKISPYYPINEDLRLTNTPELQKEKILVDPLCSSNSEVSYKSKLREDNEDNQEDMPLAYYCKPCARFFASQPTFEKHKAEFHGRLTKNACEECGRVFRTLASLKNHAKSHRGKIESDLEGSDKEVDGKIEGETRTRRELVCNTCGKVFRHRSNFKKHLVRHTTGDLTCKHCPKKFRLYRDLTRHEKTHFLPSYMCKECDYETTVLAALTVHMLKHTDNAGLPYKCNDCEKHFRKASDLQEHYNIHSGDKPFGCEQCDSSFYLRRQLSAHCRRLHPEIKANKVTSTTCDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379064;
- 90% Identity
- -
- 80% Identity
- -