Crub009592.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- lola
- Assembly
- None
- Location
- scaffold:685-3222[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 3.5e+03 -1.8 0.1 5 21 45 61 43 73 0.55 2 2 5.4e-09 1e-05 25.5 0.1 9 40 349 381 346 386 0.87
Sequence Information
- Coding Sequence
- GGTCTTCTAAGTGAGCACTATGACAAACATCCTGTCTTCATCCTCAAAGATGTTAAGTTTAAAGAACTAAAAGCCATGATGGACTACATGTACAGAGGAGAGGTGAACATCTCTCAGGACCAATTGGCAGCTCTTTTAAAAGCCGCCGAGTCGTTACAAATCAAAGGGCTCTCGGAAAGTAAAACCGGCAGCAGTGGTAGTACAAGTAGCAGTAAGGCAGAAACAAGATCACAAAAGACTGCACCCTCAGCCCCCTCGTTGGACATTCCTCACTCGTCTTCCGGCCTCACAATTGAGAAAAACAATAAAGTTCCTCGTCAAAGTCTCGCCCAAACTTCTGTTGGCGATTTACCCGAAGATTCCGCAAGTCCCTCTTTATCAAAAGGCATTTCCTCCAGGGAAGGCTCAGTAAGTCCAAACGGACGAAAACGTAAAAGATACAGGCGAAGAAGTCTTAACGATGACAACCCAATTGACAACCACGAAACCTCAAACTCGAGCGACATGTCTCATCAACCTATGAACGTGCCTGCTCTTGGTGTTGCCCCGGTAGCCGATGAGAAATCAATGTCTGACCCATCTGACTCTCTTGGCAGATCCGCACTTATGCAACAACTGACTAAACCCGCTGACGATATGCTACCGATGCCTGTTGAAAAACCTGAGCCTAATGACACACTGATTGAGCCAAAGTCTGAGTACCTGGATGAAGCCGAGGACAGTGTTGAAGACTTGACACTTGATGACGAAGGAATGGATGACACTATGGATGATGGAAACAGAGCTGGACCCTCTCACGACCCCTCTCACCCTGGTAGGGGGGGAGCGCGGTCTTGTACGAGAGGTAATTTGGTCGCTGGTGGTGAGACAGACACCACCAGCTGGGCATCTCATTTCCTCGATTGTAAAAAGGTATCGATTGTCAGCAATTGTTATATTAATCAGCGACGAGAATCGCGTCCGGATGTTGACGTGTCCGCGTTACTCAAGTCACTCGCCAACAAACAGGGTAGAAAATATAGTTTAGACTGCGTTAAAAAATCCCTGGAGGCAATATTACAGCAAGGTGTCAGTACTACTCATGCGTCTGAAATGTACGGGATTAATCGATCTACTCTGCAATTTTATTTGAAAAAATTAAATGTCGTAAGACGACGTTGGAGACAACCCGCCTCTGCTCTAGTCATTCAGCATCAATAA
- Protein Sequence
- GLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGSSGSTSSSKAETRSQKTAPSAPSLDIPHSSSGLTIEKNNKVPRQSLAQTSVGDLPEDSASPSLSKGISSREGSVSPNGRKRKRYRRRSLNDDNPIDNHETSNSSDMSHQPMNVPALGVAPVADEKSMSDPSDSLGRSALMQQLTKPADDMLPMPVEKPEPNDTLIEPKSEYLDEAEDSVEDLTLDDEGMDDTMDDGNRAGPSHDPSHPGRGGARSCTRGNLVAGGETDTTSWASHFLDCKKVSIVSNCYINQRRESRPDVDVSALLKSLANKQGRKYSLDCVKKSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPASALVIQHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01006285;
- 90% Identity
- iTF_00378918;
- 80% Identity
- iTF_00381268;