Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.3e-07 0.00063 19.7 0.0 5 43 1 39 1 41 0.92

2 4 1.8e-12 3.5e-09 36.6 0.1 3 44 49 90 48 91 0.86

3 4 0.063 1.2e+02 2.8 0.0 21 33 118 130 104 135 0.71

4 4 5.3e-13 1e-09 38.3 0.1 4 39 162 197 161 202 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.3e-07	0.00063	19.7	0.0	5	43	1	39	1	41	0.92
2	4	1.8e-12	3.5e-09	36.6	0.1	3	44	49	90	48	91	0.86
3	4	0.063	1.2e+02	2.8	0.0	21	33	118	130	104	135	0.71
4	4	5.3e-13	1e-09	38.3	0.1	4	39	162	197	161	202	0.93

Coding Sequence: ATGGAAGCTGCATTAAATGACTTGAGCCAGGGATTGTCTTTAGTTGAGGCTTCTACCAAAAATAATGTGGCCAGGTCGACACTCTACATGAGGTGTAAAGCTCTAGGAATGCAACTGAATACCTCCAGACACGATTATCCTGCAGACCGACTCAAAGCGGCTATTAATGCTGTAATGAATGGAGCCAGTTTTCAAAGTGCATCTGATAGATACAAAATACCTAAAACTGTCTTGTGGAGGCGAATCCAAAAAGAAAATTATCGGTCAATGAGGCCTGATTGCAAACGGGCTTATGATGCTCGCAAAAGAGAAGCTGCTGTTAAAGCTTTGGCTAGAGGAGAAAATCTTACCAAAGTTTCTTTGGAGTTTCAGATTCCAAAAACGACATTGTTTCGTGATAAGACAAAATTAGTGGACCAAGGAAAATTACCGGAATCATTTTGGAAAAAACGTAAGACAGAAGACGAGCATATAAAAAAAATGCGCCTTGAAGAAGCAGTCACCGCTTGCTTGCAAGGAAAAATGTCTCAAGCAGCTGCTTCAGTGGCTTATCATATTCCAAAAACCACAATTTGGCGACGGCTTCAGCAGGAGCAGAGAAAAATGGACAAAAATATTGTCACTAAAAGAAGAGTACGTCCTATTCAACAGGCAGATGTTAAAGTTGAGAGTCTAAAAGATTCTGACCTTACGATGTGTAATGACTCTTCGGATATTCCAATGACGTACATCGATGAAAATAACGTCGAAGAGTCTATTATTATTCTAACTAAGGAAGAAGTTGAAGGCCTTAATCTCGATGATAGTCAACAAATTATTGTCAGCACGGATAATGATGGGGAGTACATTCCTTGTTCGATAAACATCGAAGATACGTCTAACTACTCGGCTATTGAAAGTTAA
Protein Sequence: MEAALNDLSQGLSLVEASTKNNVARSTLYMRCKALGMQLNTSRHDYPADRLKAAINAVMNGASFQSASDRYKIPKTVLWRRIQKENYRSMRPDCKRAYDARKREAAVKALARGENLTKVSLEFQIPKTTLFRDKTKLVDQGKLPESFWKKRKTEDEHIKKMRLEEAVTACLQGKMSQAAASVAYHIPKTTIWRRLQQEQRKMDKNIVTKRRVRPIQQADVKVESLKDSDLTMCNDSSDIPMTYIDENNVEESIIILTKEEVEGLNLDDSQQIIVSTDNDGEYIPCSINIEDTSNYSAIES

Sequence clustering based on sequence similarity using MMseqs2