Basic Information

Gene Symbol
nfxl1
Assembly
None
Location
Contig22112:1285-6531[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.011 1.3e+02 3.1 0.8 4 10 48 54 47 55 0.97
2 19 5.4e-07 0.0062 16.9 16.2 1 19 62 79 62 79 0.99
3 19 7.1e-08 0.00082 19.7 14.6 3 18 116 131 105 132 0.90
4 19 0.22 2.5e+03 -1.0 0.6 5 10 156 161 156 163 0.88
5 19 0.073 8.5e+02 0.5 10.4 1 19 167 186 161 186 0.84
6 19 1.1 1.3e+04 -3.3 0.3 6 10 212 216 211 219 0.61
7 19 0.014 1.6e+02 2.8 8.6 3 18 224 239 222 240 0.90
8 19 0.0029 33 5.0 8.0 1 12 274 285 274 285 0.94
9 19 1.6 1.9e+04 -3.8 1.6 6 10 295 299 295 299 0.95
10 19 4.8e-07 0.0055 17.1 14.6 1 19 305 323 305 323 0.93
11 19 0.92 1.1e+04 -3.0 1.5 5 10 351 356 351 356 0.94
12 19 7.7e-05 0.89 10.0 9.7 9 19 371 381 369 381 0.90
13 19 0.0023 26 5.3 6.7 1 11 391 400 391 401 0.96
14 19 0.72 8.4e+03 -2.7 5.8 14 18 432 436 432 437 0.89
15 19 1.4e-05 0.16 12.4 5.3 1 12 473 484 473 484 0.97
16 19 2 2.3e+04 -4.3 1.4 6 10 498 502 497 502 0.74
17 19 0.00044 5.1 7.6 15.8 1 19 510 527 510 527 0.93
18 19 2 2.3e+04 -6.3 3.4 9 13 533 537 533 537 0.71
19 19 6.1e-06 0.071 13.5 9.9 1 16 572 586 572 592 0.90

Sequence Information

Coding Sequence
atgaaagttataataaatgataattttatgatcgcaagTCCAAAATGTCGTCAAGAGTATCCCGAATCCGAGGCGCCAACAAACTACTTCTGCTTTTGCGGTAAAACGATGAACCCGCCTTACCAACCCTGGATGATTCCCCACTCTTGTGAAGAAACTTGCGGTAAATTATTACAGCCTGAATGCGGACACGTATGCGTTCTGCTCTGTCACCCAGGACCATGTCCACCATGTCCAAAAATGGTTTCAACCAGCTGTTACTGCGGAAAAAAAGGTGCGCAACCTCGACGGTGCAACGCCAAATTCTGGAGCTGCGGAAGCCCGTGTGCCAAAAATCTTCCTTGCAATCATAAGTGTCCCGAAATTTGTCATTCCGGAGCATGTCCACCTTGTATCAGCTCGGTGACAGTTCCCTGTCACTGCGCGGACCAAATCGCCACGCGAATGTGTCGAGAATCTATATGGAACTGCGAAAAACCATGCGGTAGATTACTACCATGCCGAATTCACAAGTGTTCTGGATTTTGCCATCTTCTCACAGACTGTGGTGAGTGTCCATTAGCTAAAAACCGCACTTGTCCATGTGGAAAGAAGCGATACCAAGTTTCGTGTACGCAACCTACTGTACCGACCTGTGGCGACACTTGTAACAAACTACTAGACTGCAAATCCCACTTCTGCAACATGCGCTGCCATCCGGATGCCTGTGGTCAGTGTCTAGAAGTAGTAACCAAACAATGTCGCTGCGGTAGCTTCACCAAAGAGATAGCATGTACGAAAGACTTTCATTGCAACAAAAAATGCACCCAAATTCGACAATGTGGCCGACATCCGTGCAACAAAAAATGTTGCGACTGCATTGCGACCAACAATTACAACGTTTGTGAAAAAACATGCGACAATCTGTTGAACTGCAGAAAGCATAAATGTCCGGCTCGGTGTCACAGTGGACCTTGTTATCCTTGTCCAAGAACAGTAGTCATTCAATGTCGCTGCGGTGGATCTAAAATTACCGTTCCTTGCGGAACAACAAAGCGAATCAAACCGCCAAAATGTACAAAGTTATGCAAAATTCCACCTGACTGCCATCACACTAAACGCGAATCCCACAAGTGTCACCAAGGCCCCTGCCCACCTTGTCGGAAAATATGCGGCTTGGTGTACAAACAATGCGGACATGATTGTAAAGTAGTTTGCCACCAAAATGTCTGGGTCAAAGTCCTTGTAAATGGGTCCCATCAACCAGCTGGTCCTTGGGAGACTCCTCAAGAAGCTATGCAGCTCAAAACTTTTCCCTGTCCACCTTGTGAAGTTTCTGTGATGGTGACTTGTCTTGGCGGCCATGAAACAAAGCCCTGGCCGTGCTACAAAGCAGTACCGACATCTTGCTTACGCGAGTGCGGACAATTGCTGAAATGCAGCAACCATACATGTGAATTGCTTTGCCATAAATTGAATGATAGTCCTGGAAGCAATGAACTTTGCAAACAATGTGAACTTCCTTGTTTGTTACCCAGACCACAAGGTTGCTCACACGCATGTCCGAAACCTTGCCATCCAGCGCCTTGTCCAGCTTGTAAACAGATTGTCAAAATTCCGTGTCATTGTGGAATCAATAGTCTCTACAAACGCTGCTCGGAGCTGACTAGCGCCACCCTTGATCAGAAAAATGAACTACTGAAGTGCGGGAATCAGTGCCCGAAAAATTATGCTTGTGGGCATCGATGTATTGACAATTGTCATCCTGGAGCGTGTCGCAGTAAAGAAAATTGCAACAAACGCGTTAAGGTTACGTGTTCTTGCGCGAGAATCAAGAAGAACTTTATGTGCGTTGATGTTCAGAGAGGCAATGCCGTTGTTGCGTGTGACGACCGCTGCGAGGCGCTGAAGATTGAGAAGGAGAGACTTAGGGAGGCTGAATTGGAAAAGAAGAAACGGGAAGAAGAAATTAAAAATAGAAAAGAAATTGAAAAGTTTGAACGCAAGTTCAAGCCCAGGCATAAAAGTGTTAAAACGGACGAAAATTTGGACCAAGGTCAGAAGAATGATTACATTTTTTTACAGTTTATGGTACTGGGAGTTTGTTTGACTCTTTTGGCGTGGATTACTACCGTATATTTCGATCAATAA
Protein Sequence
MKVIINDNFMIASPKCRQEYPESEAPTNYFCFCGKTMNPPYQPWMIPHSCEETCGKLLQPECGHVCVLLCHPGPCPPCPKMVSTSCYCGKKGAQPRRCNAKFWSCGSPCAKNLPCNHKCPEICHSGACPPCISSVTVPCHCADQIATRMCRESIWNCEKPCGRLLPCRIHKCSGFCHLLTDCGECPLAKNRTCPCGKKRYQVSCTQPTVPTCGDTCNKLLDCKSHFCNMRCHPDACGQCLEVVTKQCRCGSFTKEIACTKDFHCNKKCTQIRQCGRHPCNKKCCDCIATNNYNVCEKTCDNLLNCRKHKCPARCHSGPCYPCPRTVVIQCRCGGSKITVPCGTTKRIKPPKCTKLCKIPPDCHHTKRESHKCHQGPCPPCRKICGLVYKQCGHDCKVVCHQNVWVKVLVNGSHQPAGPWETPQEAMQLKTFPCPPCEVSVMVTCLGGHETKPWPCYKAVPTSCLRECGQLLKCSNHTCELLCHKLNDSPGSNELCKQCELPCLLPRPQGCSHACPKPCHPAPCPACKQIVKIPCHCGINSLYKRCSELTSATLDQKNELLKCGNQCPKNYACGHRCIDNCHPGACRSKENCNKRVKVTCSCARIKKNFMCVDVQRGNAVVACDDRCEALKIEKERLREAELEKKKREEEIKNRKEIEKFERKFKPRHKSVKTDENLDQGQKNDYIFLQFMVLGVCLTLLAWITTVYFDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01005700;
90% Identity
-
80% Identity
-