Cglo018112.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia glomerata
Gene Symbol
ush
Assembly
None
Location
Contig26341:7666-12198[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0041 0.45 11.4 0.0 2 20 268 286 267 288 0.92
2 8 4e-05 0.0043 17.8 1.3 1 23 318 340 318 340 0.98
3 8 0.21 22 6.1 1.6 3 20 388 405 387 407 0.93
4 8 0.014 1.5 9.8 4.4 2 21 622 641 621 642 0.94
5 8 0.064 6.8 7.7 0.0 3 20 669 686 667 688 0.91
6 8 0.016 1.7 9.6 0.0 2 23 726 747 725 747 0.95
7 8 0.0084 0.9 10.5 1.4 1 23 753 775 753 775 0.99
8 8 0.089 9.6 7.3 0.5 3 21 903 921 902 922 0.92

Sequence Information

Coding Sequence
ATGGTGATCTCATTCAAAGTCGCTGAACATAATCTGTGGTGGCAGCTTAAAATCAACCGGGAAGATGAGGAGTGGAGTGACTCAGAGAAGACCCCGTCGGTGAGCAGCGGGGTGGATGGTGGAGGATCAACAGTATCCAGTCCAACACCGCCGCACCCCGATGAAGAAACGAGTCTCCCGCCTCCCCCAAGACTGAACCAAGCCTCAGGAATTTTGAGCAACTCCTCAATCGAAGACTTCCGCTTANNNNNNNNNNCAAGACTGAACCAAGCCTCAGGAATTTTGAGCAACTCCTCAATCGAAGACTTCCGCTTGCGCCTGAACATCCTCTCGGATGACGCGCGGAAGCGTTTGAGCAGCCTCGCGGACGATTACGAGCTATCAAAAGCCCTGCGACAAGGATCCAAGAGCCTCGAAAGGAGTCCCGCGAGGGTCGACAACGATGACGGAACGTCTTCGCCAAAAGAGACTGAATCCAGCAGATCGACCGGTTCGCTGTGCAAGCGCCGGGATTCCGACGAGTCCCGCCGCTCCGACACCAGCTCCGAGCACCCGAAAAAGATGCGCCTCGAAGAAGATGCACCTAGACTCCGGTTGAACGCTAGTTTGGCGACTGATCCAGCGCTTAGACCCGCCACTGTTGCTGCTCTGACCCTAAAACCCGACGGTCTGTCTCCACCGAACTCGGGCTCTTCGCTGCCAGTCGGGTTGCAGAACGCCCTGGCTTCTGGGAGGCTCTTCGTGATACCTACTGATGGTAAGGACCCGATCACCGTTGACCCGACCCGGCCCATTCCGCTCTACTGTCCGCCTTGCGGGATTAGGTTTTCATCCGCCAGCACTTTAGAGGCTCACCGGACTTTCTACTGCGCCCACAGACCGAGAGCCGAGGAGGACAACGCTAACGATGATGATGAAGACAAGTCCAGCAAATACGAAGTTCGGAAAGCGTACGCGTGTCCTCACTGCTCTTACAGCGCCGACAAAAAAGTTTCGCTGAACCGTCACATGAGGATGCACGCAGCTTCGCCGGCAACTCCAGCTCCCGTTTCTGTTCCTCCAGTTCCTGCTCTTCCGCCAGCGTCTACCACTCCAGTTTCGATTTCCAGCAGCAACAATACTCCAACGAACGGGCTCGTCAACGAAGAAACCGAGCGGTACTGCAGGAACTGCGACATCAGGTTCAACTCTTTGAAGACTTACCGCGCTCACAAGACTCACTACTGCAGCACCCGACACGTAGTCAAGGACCCACCTACTCCAGTTCCTGCAAAAGCGTCACCTCCAACAAGTTCCAGTCCTGGAGACTCTCCACCGCCGCAACCGTGTCTCGCTCTGCCGACAAACCCGATCCTGATTGTTCCCTGCTCGTTGTTCCGTGGGGCGAGTGTTCTTGCTGCCCCTTCGCTTCCAGCTCCGGACACCGCGTGCTTCCTCTTACCGAACGGGTCGCTTCAGCCGATGACCAGAGGTCTGGCACCGGCTGGAAACTCTATAGACCCCTCGCAAGTTCTCAGGGTGGCTAACAAGCCGGTGACTCCGGCTACGGTGGCCGTTCCGTCAAGGCCTAACTCTCCGTCTTCTGCGGCTTCGACTCCCCTGGATCTGAGCATCAGGCGGTCTCCGGTGCTGCATCCGGACGAGAAAGAAAATCGCGTTTCTCCAGCTCCTTCATCATTGCCGCTATCTAGCAGTCCAAGGTCTAGAGGAAGCGCTAGTCCGCGAACGAGGTCGCTGCCGACGGTCCAAACAGCTGGCTCTGGAACAGCAACACCTACTGTTCCGCCAACGGAACTAGCGCTGAGACTTGCGGAACTACCTCCGCCTCCAGTTCCTGGGGTCCTGGTCAAGCAGGGTGTTTCCAGATGTAAAGAGTGCAATATTGTATTCTGTCGGCATGAAAATTTTGTGGCTCATAAAAAACACTATTGCCAAGCGAGGGAAAATACTGTCTGCAGTCCTCCTCCTTCGGATACACCCTCACCTCCGCTGGTGCAGCTGATCTGTGCGGCTTGCGGGATCAAGTTCGCTTCGATGGATAATCTCGTGGCTCATCAAGCTTTCTATTGTCCAAAAAAACCAGAGTCTCAGGAGCATCATACGCGTTGCCCTAAATGCAAGGTGATGATTGAAACTGGTGCAACGCATACTTGCTCGATACAAGCTGGTGGTTGGAGATGTCCAGTTTGCGGTGCAGTAAGTCCAACTGCTGGTGCTGCTCAACGTCACATGGATGCTCATCAAGGTGTCAAAGCTTTTCGGTGTACTATTTGTCGGTACAAGGGTAATACTCTTAGGGGAATGAGAACGCATATTAGAATGCATTTTGAAAAACGTGGAACTGATTTACAGGAAGAAAATTACATAACATGTGTGTTGGATGACGACACAACGTCAGTACCAACACCTGAGCCAGCAACGGCAACAACTCCCGAAGAAATTCCCGCCGAAATCCAAGTCAATGGAAAAACTGAAACAAGGAAAAGTCCTCAGCCTCCACAGCCGCAGCCTCCAGCAGCTCCAGCAGCTCCAGCTCCGCCACCAGCGCACTCACCGGTAGCAGTCCCACCAACAGCAACAGCAACAGCAGCAGTAGCGAGTCCAGTAGTGACAGTAGCAGCAAGCAAAGTGAAGCAAGAACGTGAAGATACACCACCACCTGAAGAAACAGTCGATCCAGCTAAAACAAACACTAACTCGCGATACTGCCGCTCTTGCGATATAAGCTTCAACTACTTGAGCACCTTTATCGCCCATAAGAAATTTTACTGTTCAAGTCACGCCGGTGAAGCAAGCAATAACAACAATAACAACAGCAATAATAATAATAACAATAACTCAAATAGCCATACGACGAGCCCTCCAGCTGGCAGAACTGAAGCTTCCCTCCTATAG
Protein Sequence
MVISFKVAEHNLWWQLKINREDEEWSDSEKTPSVSSGVDGGGSTVSSPTPPHPDEETSLPPPPRLNQASGILSNSSIEDFRLXXXXRLNQASGILSNSSIEDFRLRLNILSDDARKRLSSLADDYELSKALRQGSKSLERSPARVDNDDGTSSPKETESSRSTGSLCKRRDSDESRRSDTSSEHPKKMRLEEDAPRLRLNASLATDPALRPATVAALTLKPDGLSPPNSGSSLPVGLQNALASGRLFVIPTDGKDPITVDPTRPIPLYCPPCGIRFSSASTLEAHRTFYCAHRPRAEEDNANDDDEDKSSKYEVRKAYACPHCSYSADKKVSLNRHMRMHAASPATPAPVSVPPVPALPPASTTPVSISSSNNTPTNGLVNEETERYCRNCDIRFNSLKTYRAHKTHYCSTRHVVKDPPTPVPAKASPPTSSSPGDSPPPQPCLALPTNPILIVPCSLFRGASVLAAPSLPAPDTACFLLPNGSLQPMTRGLAPAGNSIDPSQVLRVANKPVTPATVAVPSRPNSPSSAASTPLDLSIRRSPVLHPDEKENRVSPAPSSLPLSSSPRSRGSASPRTRSLPTVQTAGSGTATPTVPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARENTVCSPPPSDTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKKPESQEHHTRCPKCKVMIETGATHTCSIQAGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDDTTSVPTPEPATATTPEEIPAEIQVNGKTETRKSPQPPQPQPPAAPAAPAPPPAHSPVAVPPTATATAAVASPVVTVAASKVKQEREDTPPPEETVDPAKTNTNSRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNSNNNNNNNSNSHTTSPPAGRTEASLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00381413; iTF_00379200; iTF_01003820; iTF_01005573; iTF_01004626; iTF_01006592;
90% Identity
iTF_00381413; iTF_00379200;
80% Identity
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