Cglo001430.1
Basic Information
- Insect
- Cotesia glomerata
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig4730:2515-12152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 1.2 10.1 0.8 1 23 20 44 20 44 0.97 2 15 0.011 1.2 10.1 0.3 1 22 93 116 93 116 0.91 3 15 0.41 44 5.2 1.6 1 23 123 146 123 146 0.94 4 15 1.5 1.6e+02 3.4 0.6 1 23 292 315 292 315 0.90 5 15 0.0012 0.13 13.1 1.9 1 21 349 371 349 372 0.95 6 15 4.8 5.2e+02 1.8 2.2 1 23 380 403 380 403 0.87 7 15 0.18 19 6.3 0.1 2 20 447 467 446 469 0.90 8 15 0.0079 0.86 10.6 0.2 1 21 480 502 480 503 0.95 9 15 0.53 57 4.8 4.4 1 23 511 534 511 534 0.96 10 15 0.0016 0.17 12.8 2.0 1 21 554 576 554 577 0.96 11 15 0.5 54 4.9 3.6 1 21 585 605 585 608 0.95 12 15 1.2e-05 0.0013 19.4 0.1 1 21 673 695 673 696 0.97 13 15 0.0042 0.45 11.4 0.5 1 23 704 726 704 726 0.98 14 15 0.0048 0.52 11.2 0.4 1 21 800 822 800 823 0.95 15 15 0.03 3.2 8.7 0.6 1 23 831 854 831 854 0.97
Sequence Information
- Coding Sequence
- ATGATGCACGAGACCTTCGGGCAACTGGACTCCAGTGATAGTTCCAGTTCCAAGAAGTACCCGTGTCCTAACCCGAATTGCACAAGCGTGTTCAAGGAAAAGCGGCATTTAGGAACTCACATAAACTACCACTGCGGAAAGCCTCCCAGGTTTCAGTGTCCTTATTGCGAGTACATGTCTCACATGAAGTGCAACGTTAAGACTCACTGCAAGAAGCGACATTCTGACCAGGAAATCTGGGTCGTCGAGCGCTACAGCTCGAGGATGCCTGGAAATTTTCCTTGCTTGAACGGCAACTGCGGCAGCGCTTTTAAGGATGAGCTTCATCTGAAGAAACATCTGAAGACTTGCGGAGCTCCGCCGAGGTTCAAGTGCACGTACTGCGATCATTGGTCTAAATGGAGCTCTGATATGCGGAAACATATTCAAGTTGTTCATCCTGGAAGCGAAGGTTTTGTTGCAAGTTATGGAGTCAAGGTTGAGCGAATGGATGTCGACGAAGAAAAGACGGTTAAGGAAGAGAAGAAAGATGACCATGCTGTGATTATAATTGAAGATTATGATGATGATAATGTGATTGTAGAAAATGAAATGATTATGGCGTTTGAAGAAGAAAAGTTTAAGGTTAAAGAAGAAATAAGAGATGGTGATTTTGGCTTGATTGGTGGGCAAGAAGAAAGAGATCAAGATTTAGGGAAGAAAATGGTTAAAGAAAAAGAAAAAAATTTAGAGAAGAAAGTTATTAAAGACAAGGAAAAAATTACAGACAATAAAGGAAAAATTGCTAAGAAAGGAATTGTTAAATTTTTAGCAAAGAAAAAAATTGACAAGAAAGAAAAAATGATTATAAACAAATGCAGTGGACCGACAAGGTACAAGTGCTCTAAATGCTCGTTCAAGTCCATGACAATGAGCCCTATGGTTATTCACATCAGTGTGTTCCATCCCGAGTGGCAAAACCCGCAAGCGGTTCCAAAGCAGTCTCCTCGTAAATTAAAACTAGAAAGCGGAGACGACTGTGTAATAGCAATGGACGCTGTAGAGTTCCACTGCCCGAACAAGAACTGCACGAAAGTGTTCAACTGGCGGAGCAATTTGACGCGTCATATGAAGTACGAGTGCGGAAAATCGCCGCGCTTTAGATGCTCGCGCTGCGAGTATCAATCTCCATTTAAGCAGCACGTGTTGCGCCACGCAAGTGCAAAACATCCTAATCAGCTTACAGAAGCTATCAATCAGCAGCAGAACTTACCGAACAGTCAAAATTTACCTGTTCCTCAACCGGATCCAAGCATGGTTCCACCGGAACTGATGAAGCCGGAACCTCCTGGCCAGTTCCTCTGTTCCAACCTCGACTGCAACGCCGCCTTTGCCAATCTCTACGCGCTGAATTATCACACTAGCCTTGGAACAGGAGCCGCGCATGCGCAAGACATGTTCCCCTGCCCGAACTCAAACTGCGCACGCGTATTCAAGTGGCGGAGCAATTTGACCAAGCACATAAACTTTGAGTGCGGAAAACCACCGAGGTTCATGTGTTCCAAGTGTTACTATCGTTCTCCGAGAAAGCACGACGTTCTGAAGCACACCTCAAAGCAACACCCGAACGAAGAGGTCGCTCTGGTCGAGTTGTACAAGCCGGACAAGGCTAGAGGCCAGTTCCAGTGCCCGAATCTCAACTGCGGAAGCACTTTTAAGAAGCAATACAGTCTGACTTATCATCTTAAGCATTTCTGCGACAAACCTCCCAGGTTCAAGTGTCCCTATTGCTTTCATGTTGGGAAGCTATCCACTAACATCAAGCAACATATCCGGTGCATTCACCCTGGAAAAAGTGTTAGCGTTATGGAACAAGTTCCAAGAACCGGGATTCGAAGTTCCGACGCTAGGTGGCCTGGTGGTGGAACATTTGGAATTACAGCGCGCAGGTCGAGTTCCGTGAGATTGATCCGATTGGGCTTGATAGGTCCTCCAGAAACAGAATCAGAAAGAAACGACAATCCGCGCTACTGGAAGTACGAGTGCCCGAACGTGAACTGCAGCGAGGCGTTCCGGAACAAAGCGAGCCTGACCAGGCACATGCGCAATACCTGCGGCAAAGCTGTGAACTTCGAGTGTCCGTACTGCGACTACTTATCCCCCGTGCGGCGACTGTTCATCCGCCATTTGAAGCGCCACGACCGACAGCAGCGCCCCGGCCCTCTGAACAGAGACCGTACTTCGGGCCTGACCAAGAGACCGGGTCGCCCTCCGAAGCATCGGCTGGTTTCGGAGCCTGTTTACGAACAGTCGGAACCCTTGGAACCGCAATCTAGTTCTTCTAGTTCCTCTAAAGCTCCCGGGGTTCCTGGAACCGATGAGGGACAGCTGAAGGACCCGCACAAGAAACAGCGCTACTACGCTTGTCCCAATACCGATTGTTCCGGAAAATTCAGCAGTAAAAATGATCTCACTCAGCACTACCGCTTCAAGTGTGGAAAACCTCCGCGGTTCCGCTGCCCCTACTGCGAGTTCCGCGCTAAAACTGGGTTCGATGTCAGACGCCATGTTAGGAATGTTCATCCTGATCAGGATGCTTGA
- Protein Sequence
- MMHETFGQLDSSDSSSSKKYPCPNPNCTSVFKEKRHLGTHINYHCGKPPRFQCPYCEYMSHMKCNVKTHCKKRHSDQEIWVVERYSSRMPGNFPCLNGNCGSAFKDELHLKKHLKTCGAPPRFKCTYCDHWSKWSSDMRKHIQVVHPGSEGFVASYGVKVERMDVDEEKTVKEEKKDDHAVIIIEDYDDDNVIVENEMIMAFEEEKFKVKEEIRDGDFGLIGGQEERDQDLGKKMVKEKEKNLEKKVIKDKEKITDNKGKIAKKGIVKFLAKKKIDKKEKMIINKCSGPTRYKCSKCSFKSMTMSPMVIHISVFHPEWQNPQAVPKQSPRKLKLESGDDCVIAMDAVEFHCPNKNCTKVFNWRSNLTRHMKYECGKSPRFRCSRCEYQSPFKQHVLRHASAKHPNQLTEAINQQQNLPNSQNLPVPQPDPSMVPPELMKPEPPGQFLCSNLDCNAAFANLYALNYHTSLGTGAAHAQDMFPCPNSNCARVFKWRSNLTKHINFECGKPPRFMCSKCYYRSPRKHDVLKHTSKQHPNEEVALVELYKPDKARGQFQCPNLNCGSTFKKQYSLTYHLKHFCDKPPRFKCPYCFHVGKLSTNIKQHIRCIHPGKSVSVMEQVPRTGIRSSDARWPGGGTFGITARRSSSVRLIRLGLIGPPETESERNDNPRYWKYECPNVNCSEAFRNKASLTRHMRNTCGKAVNFECPYCDYLSPVRRLFIRHLKRHDRQQRPGPLNRDRTSGLTKRPGRPPKHRLVSEPVYEQSEPLEPQSSSSSSSKAPGVPGTDEGQLKDPHKKQRYYACPNTDCSGKFSSKNDLTQHYRFKCGKPPRFRCPYCEFRAKTGFDVRRHVRNVHPDQDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -