Cglo011440.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia glomerata
Gene Symbol
-
Assembly
None
Location
Contig4516:943-7781[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0011 0.12 13.3 0.3 1 23 183 206 183 206 0.95
2 9 2.3e-06 0.00024 21.7 4.8 1 23 211 233 211 233 0.98
3 9 2.6e-06 0.00028 21.5 1.9 1 23 239 261 239 262 0.96
4 9 8.9e-05 0.0095 16.7 2.3 1 23 267 290 267 290 0.96
5 9 1.7e-05 0.0019 18.9 2.3 1 23 296 318 296 318 0.97
6 9 2e-06 0.00022 21.9 1.6 1 23 324 346 324 346 0.99
7 9 0.0084 0.91 10.5 4.7 1 23 352 374 352 374 0.96
8 9 1.7e-07 1.8e-05 25.3 0.8 1 23 380 402 380 402 0.97
9 9 0.0017 0.18 12.7 1.3 2 23 411 432 410 432 0.96

Sequence Information

Coding Sequence
ATGGAAAATAGAACGACCACGACACTCCGTTCCAGGCGAGTTTGCCGATTTTGCCTGTGCGAGAATGAACCTCTGCACTTCATCTACGAGCGAGATCCAACCAGGCCCTTTCAAGTGCCGCTATCTCTCCAAATAATGTCTTGTGTTTCCATTGAGGTGTACGCTGCTGACGGAATGCCTCAAATGATTTGCAAAATGTGTCGTTGGAACTTGGACCGTTCTTACAAATTCAAACTGCAGTGTAAAAAAGCCGACGACGCTTTGCGAGCATACCCAGCAACGGGGGTACTTCCACGACCCTTTCCACCAATCACCAACGACTCAATGGACGCTAGCAACAAGCGATCCACGGAGCAACGTAGCCAATCAGAACAAGTAACCAAAAAACCGCGAGTCGACAACGGAGATCGCGACCGTGAGCGTCGCGAGCGTCAAGAATCCACCAAATCCGACCGCGAAGAAATCTACAAAGAAGAACACAGCGAAGCCGACGAAGAATCAATGGACGACAAATCCTCAAAATTAGAACCTGGCGAGATCCGGGTCCACGCTTGCGATCAATGCGACCGTACTTTCCCTCTCCGCCAAGCGCTAGTTCTCCACATCCAGCGAGCTCACCGCGATCGCACCCACAAGTGCACCGAGTGCGACCGCATGTTCTTCTCAAAGTACGACTTACAGAAGCACATGAGCACCCACGCGGAGGAGAAGCCCTATTCCTGCTCTATCTGCCAGAAAACGTTCACTCGCGCTAATCTCCTCGCCCGCCACGAGAAAATCCACCACGAAGACATGCGTTACAGCTGCCAGCACTGCGACCGCGAGTTCTTCACCCGTGAGGACCTGGAGAAACACGAGGACACCTCTCACAAGTCAATCAAGCCCTTCTCTTGTAATATTTGCAGCAAGAGATTCACTTACAAGCAAAGTCTGGAGCGCCACGAGATGCAGCACTCCGAAGACAAGAGTTTCACTTGCGAGTACTGCAAGGAGGCATTTAGGACCAGCACCAAGCTCGCCAGACACTTGCAGACCCACGCTGGACATCGTCCGTACCTTTGCAAGCTCTGCCCTCGCGATTTCCTACTGTCTCACCATCTTTCTCGCCACATGCGGACCCACTCTGTCGAGAAGCGACACATCTGCGAGGAGTGTGGCAAAGCATTCAAGCGCAAAGAGAGCCTGGAAGTCCACCAGCTTACCCACAGCAAACGCACCGGGCTCGGTCTCACCTGCGACGTCTGCCAAGAGTCTTGTCGCAACCGCGCTGACTATGTAACTCATATCAAGCAACACATAGAAGCCGGAGAGAAAATGGGCCCTGATGGACTCTCTCCTGAGATAAAAGAAAAACTGGAGTCTGAATCCGAGGAAGAAGAGGAAGAAGAACAGTTCTCTGATGGAGACGATGACTACGAGCCTCCTGCTTCTTTGCTGAAGAAATATCCCAAGCAGGTTCCTAAACAATCTGAGGAGAGCGAAGAAGAGCCTGACCAACGCGTTGTTAAGGAAGAGCCCAAGGAACAGGTGGTCTTTGTTCGTGCTAAGGACGGCCAGATTGTCAAGAAGACGATCAAGACCATGCTGCCGACTCAGAGGAAGGAGACTCCTGAAACTAGAGTCGCCGCTAAGAGCCCAGCTCCGAAGGCTCATCAGAAAATTGAAAGTCCTCCGAAGGGAAAAGACGAAACTGAAGCTGAGGTCCAGAAGATTGTCGCTTCTGTGTTCCAGGAACACAAGGTTGCTTTGAAGGCAAGCACTCCTCAGGAACCGGCTAAGGTTCGCTCTCAGGTTATCAAGGAGGAGAAGATTGAGGGGACTCCCAAGACTGTTACCCAGGTTACGAAGAGAATTATTGTTCGTAAGCCTGCGGAAACTCCTACGCCTGCTCCGGCTACGCCTGTCAAGGAAGATGTCAAGCCAGCCACTCCGGCTGTTAAGAGCACCAAGAGGGTCATTGTTAGGAAGATCATTCGCAAGGGCAACACTGAGCATGTTGAATGGCGCTACCAAGACGGTACTGAGATTGATTCAGCTGATCTTGCTAAATTGACCACCGGGCAAGTGGTGAAACGCGTTGTCAAGACCATCACCAAGCCCAAGGTCGCTCAAGCGGTGAAAGTTGCTGAGCAGAGGGCTCCAGTTGAAGCTCCGAAGTTTGAGCTGAAGACTTCGCAAGCCAGTGCGACTATCACGCCAATTCCGGCTCCTGATAATAAAAATGATAAAATTTCGGAGAAGGTTGAACAGCTGGAGAAGACTGTTGCGCAGCAGCGCTTGCAGATTGAGGAGCTGAGGAGCAGGAAGGATTCTTATGAGCCTGCTGATGACATGCTGCCGGATAGACATGATTCTGAAGACGAGCAGGAGCTGCCGCTTAAACGTGTGTTTGTTAAGACTAACCAGAGCATTTATGATGAGGAGAAGACTTATGACGCAGATGAAAAGGCCACGATTAAGAAGGTTGAGAAGAAAGAGAAGGAGAAGAAGGTTTTTATTAAGACAGAAGAACCGTCGGAGGTTGAGCAGATGAGTATTGAAATTAACTCGATGATTGCTGAGGATAAAAAAGCTGCTGAAGCTGCTGCTGCTGCTGCTGCAGAGGCTACTGTTGATACTGCTACTGCTGAGTCTGAGGAGGTTGAGCCGGAAAAAGAAGAACCTATGGAAGTTGAGCAAGCCAAGGAGCCGGAAAAAGAAGCTGAGGTTGAGAAGGAAAAGGAAGAAAAGGTTGAGGAAAAACAAACTGAAGATGTTGCTGCGGTGTTGGAGCAGCAGGATGAAGCTGAAACTTCAGACATTTTTGACGCGCCATCCTCGCCGCTGGAAAAGAATAATTCTAATTTGGACGAGTCGGTTGTTGCGCTGAGTCAGGGGAATGATACGATTAATTTGAATGATACTAATGACAGTCAGGACAGCTTGGAGGACAAGCTCTCAAGAATGGACGGTTGA
Protein Sequence
MENRTTTTLRSRRVCRFCLCENEPLHFIYERDPTRPFQVPLSLQIMSCVSIEVYAADGMPQMICKMCRWNLDRSYKFKLQCKKADDALRAYPATGVLPRPFPPITNDSMDASNKRSTEQRSQSEQVTKKPRVDNGDRDRERRERQESTKSDREEIYKEEHSEADEESMDDKSSKLEPGEIRVHACDQCDRTFPLRQALVLHIQRAHRDRTHKCTECDRMFFSKYDLQKHMSTHAEEKPYSCSICQKTFTRANLLARHEKIHHEDMRYSCQHCDREFFTREDLEKHEDTSHKSIKPFSCNICSKRFTYKQSLERHEMQHSEDKSFTCEYCKEAFRTSTKLARHLQTHAGHRPYLCKLCPRDFLLSHHLSRHMRTHSVEKRHICEECGKAFKRKESLEVHQLTHSKRTGLGLTCDVCQESCRNRADYVTHIKQHIEAGEKMGPDGLSPEIKEKLESESEEEEEEEQFSDGDDDYEPPASLLKKYPKQVPKQSEESEEEPDQRVVKEEPKEQVVFVRAKDGQIVKKTIKTMLPTQRKETPETRVAAKSPAPKAHQKIESPPKGKDETEAEVQKIVASVFQEHKVALKASTPQEPAKVRSQVIKEEKIEGTPKTVTQVTKRIIVRKPAETPTPAPATPVKEDVKPATPAVKSTKRVIVRKIIRKGNTEHVEWRYQDGTEIDSADLAKLTTGQVVKRVVKTITKPKVAQAVKVAEQRAPVEAPKFELKTSQASATITPIPAPDNKNDKISEKVEQLEKTVAQQRLQIEELRSRKDSYEPADDMLPDRHDSEDEQELPLKRVFVKTNQSIYDEEKTYDADEKATIKKVEKKEKEKKVFIKTEEPSEVEQMSIEINSMIAEDKKAAEAAAAAAAEATVDTATAESEEVEPEKEEPMEVEQAKEPEKEAEVEKEKEEKVEEKQTEDVAAVLEQQDEAETSDIFDAPSSPLEKNNSNLDESVVALSQGNDTINLNDTNDSQDSLEDKLSRMDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00382082;
90% Identity
iTF_00379109;
80% Identity
-