Cglo000627.1
Basic Information
- Insect
- Cotesia glomerata
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig86377:6885-11047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.7e-05 0.004 17.9 1.8 1 23 338 360 338 360 0.98 2 12 0.00022 0.024 15.4 4.3 1 23 364 386 364 386 0.98 3 12 0.0015 0.17 12.8 5.6 1 23 391 413 391 413 0.96 4 12 0.00025 0.027 15.3 4.4 1 23 466 488 466 488 0.97 5 12 5.7e-05 0.0062 17.3 2.2 1 23 493 515 493 515 0.97 6 12 0.0001 0.011 16.5 2.2 1 23 570 592 570 592 0.98 7 12 0.00031 0.033 15.0 1.0 2 23 600 621 599 621 0.97 8 12 9.9e-07 0.00011 22.8 2.1 1 23 632 654 632 654 0.96 9 12 0.00035 0.038 14.8 1.3 1 23 660 682 660 682 0.97 10 12 0.00016 0.017 15.9 0.7 1 23 688 710 688 710 0.98 11 12 4.8e-06 0.00051 20.7 2.0 1 23 716 738 716 738 0.96 12 12 8.5e-05 0.0092 16.8 0.3 1 22 744 765 744 765 0.96
Sequence Information
- Coding Sequence
- ATGACCGAGTGCTACCTGGATTTCGATAGAGTTTGTAGAATATGTTTAACAGAATCAACAAATTTAACATCATTGTATTGTAATGATTCGGTACCAGGTGTATTTCCAAGTTTATCACAGCGTATATCAACATGTGGGGCTATTGAGCTTAATGAAAGAGACGGATTACCATCGTTAATTTGTGAGAATTGTATTTATAAAGCAAGTGTAGCTCATGATTTTCGTGAACAGTGTCAGAATTCAGATGCACGATTACGTTTATGTTACGATAAACCAGCTCGTCTACAATCAAATTTGCAGGACTCCAGTACGCAAACAGAAATTGAAGAGAGAACGATGGCTAAAAATGTAAATTCAAATTATTTTGTAAAACAAGAAATTCAAGGGTTTAATCAAGATTTAAATACAATAGGTGTTTACCAAAATCCCCAAGTTGAAGTTACAAGCAATCAAATAGTTACTGACGATAAATTATTCCTATGTAATATTGACTACCAAACGAAAGAATTAGAAAAACAGCCAGTGCTTGAATCGACTCAGCATCAAAATCAGCAGCACCAACACCAACACCAACTCCAACATCAACATCAAGAACTCGATCATCAAGATATTCAACATCAAGTATTAATACCAGAGCAGCAACAAGTTTCTATAGCAGTCGCGATTGAAACAGGGCAACGATTACCAAATTCTGTTACAATGGCTGAAATGAAACCAGTGGTTGCACAATACGTGGACAACGAATTGTTGGTTAATAACGATGACAGTGTTGAAGACGAAGATCTTGAGGATGAAGAAGAAGAAACTGAAATTCCAGGCGACGGATTTAACAAAGAGCAAGATATTTCGATTGATTTACACGAACCTAAGTGGGAAGAAGAATCAGAGGAATTAGTGCCCAGCAAAAGATTGACGCGCAAGGCTAAGGATATTGCCGGTAAATCATACAGCGTTGATGAAATTGACGAAGATTTACCTGATAATAACGATGACGACGACGATGAGCCGAAATTCAAGTGTAAAGTTTGTTCAAAACGATACAACACATCGAAAGGCTTGAAAAATCATGCCCAAGTTCATGATAAAAAACACAAATGCCACGTGTGTTTAAAGTCATTTTACAACCTTGAGAATATGGAAAAACATGTAAAAATTCATGAAACTAAGCCTCATGCGTGTCAACTGTGCCATACATGTTTTGCTAAGCCGCAAAGCTTGGTTCGGCATCTCAAGAGTCATTCGGATAAAATTCAGGGTAGCAATAATAATAATATAAAAAGCAATGAAAACGGAACAATAACGATCGTAAGAACTGAAGATACCGAGGATGACGATGACGATCGTGACGGTTTTCAGACAAATGAAACCGATGAATTCGACAGTGCGCCTGGTCTGTACAAGTGCAGTGAATGCAATCAGTTTTGTTCGACTTTGAAGAATCTCAAAAGACATTCATTGATTCACGGTGATAAAAAATATTCCTGTACGGTTTGTAAAAAATATTTCTTCCGACCAGATACACTGAAGAAACATGCTGAAAAACATGGTCATGGTTTACTGGACAATTTGTCAGACGAGAACAAATTGTATGAGTCCGATGACGAGACATTCAATCGCAGTAATACGCTGGCTAATAATATCAACGGCAATGGGACCAATGATACTGATAATAAAAAAATTGACAGTGATGAAGACGGTTCTGGGGAGTACAAGTGTCAGCATTGCGACAAAGTTATGGCAACTAAAAAAGGATTAAGACGGCATGTGTCGATGCATAAGCCAAAAGCAGAGCCAGTAACCTGTGAAATTTGTAAAAAAGTGTGTGCTAGTCAAGCTAGACTGGTTCTTCATCAAAAAACACACAGTAAACCTAAGGAAAAAGTACCGCGGGAATATCTCTGTCATATATGCAGTAAAGTATACCCAAGCAATTCATCACTGACCTATCACATGAGGACACATACTGGAGTAAAACCGCATGTGTGTCAAACATGTAACAGCGGTTTTACAACAACGACCAGTCTCGCTAATCACATTCGAATCCATACTGGTGATAAACCCTTCGTTTGCCACGTATGTAGTGCTGCATTTGCTGTAAGCTCGGCCTTCAGACGTCACTTAACTCGTCATACCGGAGAAGCCAATTATCTTTGTAAAACTTGCGGCAAGGCATTCAAAAGACTCAGCACACTGAAGGAACATACCTACACCCATTCGGGAGAAAAACCTTATGTTTGTAAAACATGTGGTGCTGCTTACAGCCACAGTGGAAGTTTATTTGCTCATCAAAAACGTTGCAGAGTACAGTATGGTGAAATGGTTACTTCTGAGAATAATCATTCGCATGTACCACATCATATTCACGTTAATAATGTACAGACAGCGGTCAGATCACTTGCAGTTATCGGACAAATGTTTTAA
- Protein Sequence
- MTECYLDFDRVCRICLTESTNLTSLYCNDSVPGVFPSLSQRISTCGAIELNERDGLPSLICENCIYKASVAHDFREQCQNSDARLRLCYDKPARLQSNLQDSSTQTEIEERTMAKNVNSNYFVKQEIQGFNQDLNTIGVYQNPQVEVTSNQIVTDDKLFLCNIDYQTKELEKQPVLESTQHQNQQHQHQHQLQHQHQELDHQDIQHQVLIPEQQQVSIAVAIETGQRLPNSVTMAEMKPVVAQYVDNELLVNNDDSVEDEDLEDEEEETEIPGDGFNKEQDISIDLHEPKWEEESEELVPSKRLTRKAKDIAGKSYSVDEIDEDLPDNNDDDDDEPKFKCKVCSKRYNTSKGLKNHAQVHDKKHKCHVCLKSFYNLENMEKHVKIHETKPHACQLCHTCFAKPQSLVRHLKSHSDKIQGSNNNNIKSNENGTITIVRTEDTEDDDDDRDGFQTNETDEFDSAPGLYKCSECNQFCSTLKNLKRHSLIHGDKKYSCTVCKKYFFRPDTLKKHAEKHGHGLLDNLSDENKLYESDDETFNRSNTLANNINGNGTNDTDNKKIDSDEDGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLVLHQKTHSKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCQTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMVTSENNHSHVPHHIHVNNVQTAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381314;
- 90% Identity
- iTF_00381314;
- 80% Identity
- -