Cglo009045.1
Basic Information
- Insect
- Cotesia glomerata
- Gene Symbol
- Zbtb8a
- Assembly
- None
- Location
- Contig35126:4356-6915[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 2e+02 3.1 0.4 1 12 157 168 157 175 0.83 2 10 1.2e-06 0.00013 22.6 0.6 1 23 305 327 305 327 0.98 3 10 0.00043 0.046 14.5 1.2 1 23 333 355 333 355 0.95 4 10 2.2e-07 2.3e-05 24.9 0.9 1 23 360 382 360 382 0.99 5 10 1.6e-05 0.0017 19.1 0.2 1 23 388 410 388 410 0.98 6 10 6.5e-06 0.0007 20.3 1.7 1 23 416 438 416 438 0.98 7 10 7.7e-05 0.0083 16.9 0.1 1 23 445 467 445 467 0.93 8 10 0.0015 0.16 12.8 0.6 2 23 474 496 474 496 0.96 9 10 1.6e-05 0.0018 19.0 3.4 1 23 502 524 502 524 0.98 10 10 0.00015 0.017 15.9 1.2 1 23 530 553 530 553 0.94
Sequence Information
- Coding Sequence
- ATGATGCCTGATACAAACTGTCGACTGTGTTTTGAAAAACTGGATAAAAATTACTCCAATATTTTCGACTGTCAAAATGAAGAATTATCTTTGGGAGCTAAGATCATGATTTGTTTATCAATTCCGGTACATAATAACGACAACCTGCCAGAAAAAATTTGTATACCTTGCACCGATGAAATAACTCGATTTTACGATTTTAGAAATAAATGTCAAAGTACGTATTATTCTTTAATTCAAAAATACAAAGAGAATGGTATAAAGGAGCCTGTAGATAGTAAAGTTAATTTAAGCTTAACAAAAGACGAAGAAATTCTGGACGAGTATATTATCAACAGCCTAGAAGAGGAACCGGAAATAAATGATGATAAAATTAAAAGTGATAATCTAGAAAATTTCGTAGAAGAGAGTTTTGTAACGAGTCGAGAAATTATTAAAACTGGTGAGGAAAAAAATTTAAGTAAAAAATACAAGTGTTTTTACTGCGACTTGTTGTTTGATAGTTACCAAGGAGCTGTTGACCATTGCATTGGATGTATGGTGAGTAAAAAAAATACAAATGGGATTGATGCTTTAAAAGAGGACCAAGATGACAAAGAGACTGGTTCGGATTATGCTGAAGTAGAGTTTATTGAAGACATAGACTACGATGGTGAAGAAAAAAATTATTATGAAGCTGAAGCTGAAGAAAATGTTGCTGAGATGATTGAAAATAAAAAAGAACTTGAAGATAATTCAGAGAATAAATTTGAAGATGAAGATTACATATCAAGCGACGAGCCTTATCAAGATGAGAGTGAGAATCAAGACCCTAAAGATTCTTCGCAGAATATTTTGCTTCCTAAAGCAGAATTAAACCCTGAAGTACGAGCAAAGAGGAGGTACTGCAAAAAGAAAATTTATCCTGAGAATTATCCCTGCCCTGAATGCAAAAAACCGTTCTCGTCTCGCAGTTTAATGCGAAGACACTTCATGGTGCACACTGGAGAGCGTCCTTACAGGTGCGAGACTTGTGGCAGGCGCTTTTCCCAGCTGGGGGCTCTGAATTTCCACAAGAAGCTCCACGAAGACCCTCCTTACCGCTGTGACCGCTGCAGCAAGCCTTTCATGAGGCCCAGCGACCTGGAAAAGCACCTCAGGACTCACACTGGGGAAAAACCCTTCACTTGTCAAGTCTGTGGGAAAAATTTCACCCAGCTGGTGGCGGTTCAGCAGCACGAGCGGGTCCACACTGGTGACAAGCCTTTCCGGTGCAGGATTTGTGGGAAAACTTTCTCGCAGAGCGCCAACAAGTCCAAGCACGAAAAGATCCATCAGAAGGGACTCAAGCCTTTTATCTGCGACCTCTGTGGGAGAAGTTTCTCGGATAATGAGGAGATGGAAGAACACAAGGCTGGGCATGGAGGAGAAAAAGTCCGCGAGTGCGATTTTTGTGGGATGAAGTTCAAAAAATTCTCTGAAGTTATTGATCATGTCAGGCGGTATCATACTTTTGAAAGACCTCACACTTGTGATTTTTGTCAAAAAGCTTTTTATTCGTTATATAGTCTCAAGCAGCATATTATGACTCATACTGGGCAGAAGCCCTTTGCTTGCGCTGAATGTCCGAGTAAATTTACGCAAAAAGGCAATTTACAGAAACACTTTTCGAGAAAACATCCGGGGAAGATTTTTAAGGATATTTGGAATAATAAGGACACTGATCTCAATGGTCTTAATGGTCTAGAAGGATTTGAAGATAACTCGATAGATAAACCTGATGTTGATGTAAAAATAGAAAATTGA
- Protein Sequence
- MMPDTNCRLCFEKLDKNYSNIFDCQNEELSLGAKIMICLSIPVHNNDNLPEKICIPCTDEITRFYDFRNKCQSTYYSLIQKYKENGIKEPVDSKVNLSLTKDEEILDEYIINSLEEEPEINDDKIKSDNLENFVEESFVTSREIIKTGEEKNLSKKYKCFYCDLLFDSYQGAVDHCIGCMVSKKNTNGIDALKEDQDDKETGSDYAEVEFIEDIDYDGEEKNYYEAEAEENVAEMIENKKELEDNSENKFEDEDYISSDEPYQDESENQDPKDSSQNILLPKAELNPEVRAKRRYCKKKIYPENYPCPECKKPFSSRSLMRRHFMVHTGERPYRCETCGRRFSQLGALNFHKKLHEDPPYRCDRCSKPFMRPSDLEKHLRTHTGEKPFTCQVCGKNFTQLVAVQQHERVHTGDKPFRCRICGKTFSQSANKSKHEKIHQKGLKPFICDLCGRSFSDNEEMEEHKAGHGGEKVRECDFCGMKFKKFSEVIDHVRRYHTFERPHTCDFCQKAFYSLYSLKQHIMTHTGQKPFACAECPSKFTQKGNLQKHFSRKHPGKIFKDIWNNKDTDLNGLNGLEGFEDNSIDKPDVDVKIEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379093;
- 90% Identity
- iTF_00379093;
- 80% Identity
- -