Cglo006050.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia glomerata
Gene Symbol
-
Assembly
None
Location
Contig130401:1421-5953[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.09 9.7 7.2 4.7 1 23 223 245 223 245 0.95
2 13 0.00059 0.064 14.1 0.4 1 23 250 274 250 274 0.94
3 13 4.7e-05 0.0051 17.6 0.4 1 23 362 385 362 385 0.97
4 13 2.5e-05 0.0027 18.4 0.1 1 23 391 414 391 414 0.97
5 13 0.017 1.9 9.5 0.6 2 23 426 448 425 448 0.87
6 13 6e-07 6.5e-05 23.5 4.6 1 23 454 476 454 476 0.98
7 13 6.1e-07 6.5e-05 23.5 0.6 1 23 482 504 482 504 0.98
8 13 4.4e-05 0.0047 17.7 3.9 1 23 510 532 510 532 0.98
9 13 1.8e-08 1.9e-06 28.3 1.2 1 23 538 560 538 560 0.99
10 13 4.7e-06 0.00051 20.7 5.5 1 23 566 588 566 588 0.99
11 13 0.078 8.4 7.4 4.5 2 23 595 616 594 616 0.97
12 13 3.5e-08 3.8e-06 27.4 1.0 1 23 622 644 622 644 0.99
13 13 4.3e-07 4.6e-05 24.0 3.3 1 23 650 672 650 672 0.99

Sequence Information

Coding Sequence
ATGCAATTTTTTAATTTGCTAATTGAGGGTCAAAAAAAATTGCGCGATTTATTGAAACAAGAAAATGAATTAAAAAAGAATGATCGGTTGAAAATAAATGACAATCCGTTGGAGCAGTCGAATCCTGAGTCAATGGAGTTGGTAAATTTCGAGCAAAAGGATGAAAATTATGGTCAAAGAATAATAATAAGTATGCTACCAGACGGCTCGATGTACGCAGCAGAACACGACATGAGCCTCCAGATGGAAGGCCTAGAAAAGCCTCGAAGAAAGCGAGGCCGACCGCCTAAAATCCACGTGGATGGTATCAAGGAAGAAGTATTGGAGACCAGCCAGGAAGACGAAGACAAACAAGACGACTACGACGACGAGCTGGACGGTGACGGTAGACGGAGACGTAAGCGCAAGATCCCCAAGCGTTTTTCCGAAGTCGTCCGGGGAAAAGAGCTAGAGAGGATTTTCAAAGAAGAGGGAGTCATTGACGATGAAGAATACACAAGAGACCACGAGCTGGATGACAAAGACAAGCACTTACCTCTTCCCGATGGCAATGTCGAGGTGATTGGCCACACCGAGTCCCACGACGGAGAAGACCTCGGCGAGTTGATTATCATGAACCGCGGTCGGGGTCGCGGGAGACCCAAGACCAGGCACAAAAAGGCTAAACATATTTGCAACACTTGCGGCCGCGCGTTCCAACAGCGTCACCGGTACATTATGCACAAGAGCAGTCACTTGGGTGACAAATACGAGTGTCTCGAGTGCAGCAAGCAGTTCACAATACTGGACAATTTTCTGGCGCATCAGAAAACTGAGGAGCACACTGGTAAGAGAATTATTAAAAATAATTGCACTAATGAGGAGTACTTGCAAGATTTCGGGGAAATTATTGATGATGTCAATGATTCCGCGGATGCGCTCGAGTCTGATGACAAAGATATGAAAAATATGAAAGTACAAAGCTTGGATGAGGATATCAAAGATGATATTGATGAAAATAGCAATGATAATAATGGTAATGATGATAATGATGGGAATATTTATGATGAATTTAAAGAGAACGAATCAAAAGATGTAAAAGAATACATGTGTGATAACTGCGAAGAAACTTTTACAAATTTAGACACTCTTGAAGGTCACATTAAAAAATTCCACAATAAAGATAATCCATTTGTGTGTGAAGTCTGCGAGGAGACATTTGCGTCTGAGGAAAATCTGAAGGTCCATGTGTCTACTCAGCATTTCACGAACCCTAAGAAGACCAACAAAGCTTGTATCTGTGACATCTGCGGTAAAGTACTGAACCACCCTAGCTCAGTGGTGTACCACAAGGAAGCTGAGCACAACAATGGCCGGAAATTCGTGTGCAATAAATGTGGCAAGAATTTCAAGCACAAGCAGCTTCTCCAGCGGCATCAGCTGACGCATTCTCAGGCTCGGCCGTTTGTTTGCAAGCTGTGTGACGCCAGTTTTAAAACCAAAGCGAATTTGATAAACCACCAGTCGACGCACACTGGGGAAAAAAAGTACCGGTGTACTCAGTGTGATCGACAGTTTGCACACAAGACCAGCTTGACTCTGCACTACCGCTGGCACAACGGAGAAAAACCTTACAGGTGTGAAATCTGCGGGAAACATTTTTCTCAAAATGGCAATTTGCAAGAACACTTGCGAATTCACACTGGAGTTAAGCCTTATGAGTGCGATGAGTGTCATAGAAGGTTCACGACTTCTTCGCAGTTTAAATTGCACCAGAAGCGACACACTGGGGAGAGACCTTGGAAGTGTGAGTTCTGTTTCAAGACTTACTTGCATAAAGACACTTGGAAAACTCACCTAAGGAGACACAATGAGGAAAAACCCTTCCAGTGCACGGATTGCGATCGTTCTTTTACTGAGCAGTGGGCGTTGAAGAAACACATTCGCACCCACACTGGTGTCAAGCCTTACAAGTGCGACATCTGCGAGAAGCGGTTCGCAGACTGCTCCAATCTTACCAAGCACAAGCGCATCCACAGAGAGCACAAAAATCTCCCCGTGGGAGGTGTCAAGACAGAAATTTCTAGAGTGATTAATAATAATGCGGCTGAACATGGAGCTGGTGTAGAAGCTGGACAGGTTTGGCAGATCTACCCGGCCCAGGAAGCTGAAAACTCTATTGAGTTGCAGCAGGTGATCACCGAGGAGGGCGCTGAGGAGAACCAGCCGGTTATTTATCAGGTGTCTTATCAAGACCCGAATGACCCGAGTCAGTCCAGGACGCTTCAATTGAGCACCATTGAGGGAAAAGAGCTTCTGTCTTCGCTGCAGGTTCAGGAACAGCTGGTCAAGCCCAACACTTCTCAAGAAGAAATTGACTTCTCTGACCAGAGGTTCCTCCAGATTACTGACGCCGAGGGGAATCCCATTACTCTGACGTATCATGACGCTAAACAGCTGATTGCTCACAGTGGGTTCGGGCAGCACAATGGGCAGATTATTCGAGTACAGTCGGAGGTTCCTGAAGAGATTCCTAATCAGTTGGCTATCCATATGCGCCAGACTTTAGCTGAAGATGTCACGCAACAAAATATTGCGCTGGATGACAACACAGCGCTTGTTAAAGTTCTGGAAGATGATTCTGGTGAGCAGATTAATGGCTCTGCTCCGGGGACTACTTATATTCATGTCCCTACTACTGCACATTTTTACACCTCGGTGTTGGCGAATCCGGGGGATGAATATGTCTCTATTATGTAG
Protein Sequence
MQFFNLLIEGQKKLRDLLKQENELKKNDRLKINDNPLEQSNPESMELVNFEQKDENYGQRIIISMLPDGSMYAAEHDMSLQMEGLEKPRRKRGRPPKIHVDGIKEEVLETSQEDEDKQDDYDDELDGDGRRRRKRKIPKRFSEVVRGKELERIFKEEGVIDDEEYTRDHELDDKDKHLPLPDGNVEVIGHTESHDGEDLGELIIMNRGRGRGRPKTRHKKAKHICNTCGRAFQQRHRYIMHKSSHLGDKYECLECSKQFTILDNFLAHQKTEEHTGKRIIKNNCTNEEYLQDFGEIIDDVNDSADALESDDKDMKNMKVQSLDEDIKDDIDENSNDNNGNDDNDGNIYDEFKENESKDVKEYMCDNCEETFTNLDTLEGHIKKFHNKDNPFVCEVCEETFASEENLKVHVSTQHFTNPKKTNKACICDICGKVLNHPSSVVYHKEAEHNNGRKFVCNKCGKNFKHKQLLQRHQLTHSQARPFVCKLCDASFKTKANLINHQSTHTGEKKYRCTQCDRQFAHKTSLTLHYRWHNGEKPYRCEICGKHFSQNGNLQEHLRIHTGVKPYECDECHRRFTTSSQFKLHQKRHTGERPWKCEFCFKTYLHKDTWKTHLRRHNEEKPFQCTDCDRSFTEQWALKKHIRTHTGVKPYKCDICEKRFADCSNLTKHKRIHREHKNLPVGGVKTEISRVINNNAAEHGAGVEAGQVWQIYPAQEAENSIELQQVITEEGAEENQPVIYQVSYQDPNDPSQSRTLQLSTIEGKELLSSLQVQEQLVKPNTSQEEIDFSDQRFLQITDAEGNPITLTYHDAKQLIAHSGFGQHNGQIIRVQSEVPEEIPNQLAIHMRQTLAEDVTQQNIALDDNTALVKVLEDDSGEQINGSAPGTTYIHVPTTAHFYTSVLANPGDEYVSIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00378208;
90% Identity
iTF_00382051;
80% Identity
-