Cglo013388.1
Basic Information
- Insect
- Cotesia glomerata
- Gene Symbol
- ZNF236
- Assembly
- None
- Location
- Contig98127:24-8981[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.5e-07 2.7e-05 24.7 2.6 1 23 89 111 89 111 0.98 2 19 0.0056 0.6 11.0 3.3 1 23 117 139 117 139 0.99 3 19 0.0024 0.25 12.2 6.7 1 23 145 167 145 167 0.98 4 19 5.5e-06 0.0006 20.5 2.6 1 23 171 193 171 193 0.98 5 19 0.001 0.11 13.3 4.7 1 23 247 269 247 269 0.98 6 19 2.1e-05 0.0023 18.7 0.7 1 23 275 297 275 297 0.99 7 19 1.8e-05 0.002 18.8 1.4 1 23 303 325 303 325 0.98 8 19 0.00035 0.038 14.8 7.4 1 23 331 353 331 353 0.98 9 19 0.00013 0.014 16.2 0.2 2 23 664 685 663 685 0.94 10 19 0.12 13 6.9 2.6 2 23 717 738 716 738 0.96 11 19 6.3e-05 0.0068 17.2 1.3 1 23 744 766 744 766 0.98 12 19 0.00072 0.078 13.8 2.1 2 23 775 796 774 796 0.96 13 19 7.3e-08 7.8e-06 26.4 1.4 2 23 889 910 888 910 0.98 14 19 0.018 1.9 9.5 6.1 1 23 916 938 916 938 0.97 15 19 6.2e-06 0.00067 20.3 1.9 1 23 944 966 944 966 0.98 16 19 0.0012 0.13 13.1 3.9 1 23 972 994 972 994 0.99 17 19 0.00068 0.073 13.9 0.8 2 23 1200 1221 1200 1221 0.97 18 19 4e-06 0.00043 20.9 3.8 1 23 1227 1249 1227 1249 0.98 19 19 9.8e-07 0.00011 22.8 0.9 3 23 1257 1278 1255 1278 0.96
Sequence Information
- Coding Sequence
- ATGAAATGTGATAATTCAGCCTCGGACTTGAGCGATAAAAAGCCCGCTGATACAACAAGCAAAAGTGATATTTTGCAACAAGCTTTGAAGATTTCTGGGTTGTCAGAGAAAGGAAAAAAACCTAATGCTGATAAAACGGATTCTCCTAAAAAAGTAGCTAAAGAAGATGTACAAAGCTCTTTTGTAACTCTATTGGATAGAACTGAAGGTTCTTTGAGGAGATATGTTACAATAAAACAACGTAGTGTGGGAAATACAAAATGGTACTCATGTTCGTATTGTCATAAAGAGTTCAAAAAACCATCGGATTTAATTCGTCACTTACGAGTGCACACTCAAGAAAAACCTTACAAGTGTTCGTACTGTTGTCGTTCGTTTGCCTTAAAGTCAACGATGATCGCTCATGAACGTACACATACAGGTACCAAAAATTACAACTGCGGGACTTGCGATAAGAAGTTTACTTGTCATAGCAGTTTGAAGGCTCATACCAGAACACACACAAAACCCCACAAGTGTAATTCTTGCGGTAAATCATTCAGTACGAGTGCTGTGTTAAAGAGTCACATGCAGAACCACGCAAAAAAGTCAAAGTTGTCAGCAGATGCAGAAGCGTTGATGCCGCAAATTGTATTGGAAGAGCCACTGGTGATAAGTGACGCTGGAGACAAAATAAGTGTTGCTCATGTTAAATCCAAGCAATCTGGCGACGATGGTAAAGACAGTGCTGGCAGGCCTCATAAGTGCTGGGTTTGCTCGGCAGCATTTAGAAAAATTAGCCACTTAAAGCAGCACTATCGACGTCACACAGGGGAACGGCCCTTCAAGTGTCCTAAATGTGAAGGCCGGTTCACCTCCAACAGTGTCCTCAAAGCTCACTTACAAACTCATGAAGCTTCTAGACCTTACAATTGCACTGTTTGCAATGCAAAATTTTCTACGCAGAGCAGCATGAAGCGACACTTGGTTACTCACAGCAATGTTAGGCCCTTCATGTGCCCTTACTGTCACAAGACCTTTAAAACTACCGTCAATTGTCGGAAGCACATGAAAattcataaaacagaactTGCGCAGAAACAGTTGGAAAAACAAAAAGAAAAATCTGCAGAGACTGTCATACATAATAAAGAACCAATTCCGACATTAACAGAGAACTTGACTTTGCCAGAAGATATTTCGGATACTTTCCAGCCAAATATGAGTTCTGATTTCACTCAAGCATTTAATGATCAGTTTACGACTATAGATGTTGATAAAAATAAGTCGTTTTTGAGTGATGATAACCGTACTGAAACGATAGAAAATTTACCAGAAGTAACAAACCCCTTAGACTCAACTCAAACATTACACGCCGACGAAACTGGTACTATAACACTACCAAATTACACCGGAGATCAAACCTTAAGCGCAGAGAGCATTCGCGAAATAGAAGAAACATTAAACCAACAATTATTCAACATCGGCATGAACCTCGGCCTAGGTACAAATTTATCCCGCCAGATAAGTGAAACAGACGTCCCCCTTGAATCTCGCTCTCAGCCAATCCTAAACATAATGTACGACTCCTCAAAGCCTCTCGACTCCTCCGAATCTATCAACACAAACATCTTCCCTTCGCACTTCGACACCTTTGACATGAGCCAAATAACTCTTCAAGCTACAGAGTTGGACATCGGAATAAATTCCGCAAATTCCACAAGTATGGCAAGTATATTACCAAAATCCGCTCAAGAAGCCCAACGTTTAGTCCCAGTATCTTGCAATAAAACCGAAATCACCTCTGAGTCTCGTCATCTAAAAGACCGCCACCTTATCGTAAACTCAATTCAATCTTACCCAGACTTAACCAAGCCTGTGCAATCTTGCCCCAAGTATCCAAAAATAATCGCTCAAGCCGACACAACAAACCAAAGTGACCTCTTGGTCAGCAATTTAAACTGCGAATCTAATGAGAATTCAGTAACATCCATGGAAAATTTTAATCTAACCTGCAGCTACTGCGACAGACCTTTTAATTCTTTAGAAGATTTAAAATCACATGTTGAAGGTCACCTCTCTGGATTTCCATCCAGCGATTCTACGACTGACAATAATAATATTAACATTGAAGAAAAAGTTCCTGAAAATAGCAAAGGGGGGTCTTTACAGTGTCACATGTGTTCAAAAAAAGGCTTTGAAGTAAATTCATTAAAAAAACACTTATTAACTCATAAAGGAGAGAAAGAATTTCAGTGTTTAGAATGTCCGCTAAAATTTTGCACTAATGGAGGGCTTAGTCGGCATTTAAAAATTCACAATGGAAAAAAAATAGATTCTTGGACGTGCTCAGTGTGTTTTGTGTCATTTTCTACAGAGAGTCATTTAAAAATGCACTCGAGTACTCACAATAAATGGAACGTTCATCATATTGAGCCTGATAGCTCTCAAAAGGATCCATTAAAAATAGAACCGGACTTGCTGATAAATATTGAACCAGATTCTGCAGCTTCAGTGTCTGAAAAGCTGCTTTTTGATACAGTAGTAGAGCAGAACTTCCTCAAGAATTCCAGCAACAACTCCAGTGGCTTGCCGAGTTCCAGCAGCAGCAACAACAGCAACAACAGCAACAACAGCAACAACATCAGCGGCTTGCTATCAAGTGAGAAGAAAGAATACGACAATAAATGTAAGTACTGTCCAAAAACATTCAGAAAGCCCAGTGATTTAATTAGACACGTAAGAACGCACACAGGCGAGCGGCCGTACCAGTGCGAGCACTGTGACAAAAGTTTTGCGGTGAAATGCACCCTAGACTGTCACATTAAAGTGCACACAGGCAATGAAAAATTTTCTTGCCACGTTTGCAATCGCCTGTTTGCTACAAAAGGGAGCTTGAAGGTCCACATGCGCTTGCACACTGGCTCCAAGCCGTTTAAGTGCTCCTTTTGCGACTTGCAGTTCAGGACCTCCGGGCACCGCAAGGTCCACTTGCTCACTCATATGCGCGATGATAAAAATTCGGGGAAGCGTAAGCAAAAGTCGGGGAAAATTCAGGTGATTCCGGAGGTTAAAATCGAGGGAGAGAGAGAGCTTGAAGAGTCTTTGGTGGATAATCAGTTTGCTAATCTTGATACTATTACTATTGACGCGACAGGGTTGGCTGAGCAATTGACTTTTAATCCTGATGGGACTATTTTGAATAATAATTCAATGCTTTCGGTTAATGAGAGCAATCAGTTGGTTGCTAATTTACATTTTTTAATTGCTAATGGACTTGTTACTATTCAAACTGAGGAAAATATTTTGCCTCTGACTAATAATTCTAATGAGGGGAATAATGTTAGTATTAGTGTTAATAATAATAATAATGGTGAAAATCAAGGAGCGAATCTCGAGGGTAGTAATTTAGTTATTGCGCAAGTTAATAGTCTTAATTCTAATTCAGAGCGATTTAATGATTCTTGTATGACTCTTGTTGATTCTTCTAATAATTCTCCGGTAATTATTGGACTTCCTGCGGAATCTTCTTCACTTTCTGGAGCTACTTCGATTATTTCGCAAAAATTAACCCCGAAAAATAATTCTAATTTAAACAATAAAAATTCGAGTAGTAGAGAGTGCGATATTTGTGGAAAAATTTTTGGAAAACCTTGCCAAGTTTTAAGACACAAGCGGATTCATACCGGAGAAAAACCTTACAAGTGTGAATTGTGCTCTAAATCATTTGCTCAAAGGTCGACTTTGCAAATGCACATGAAGCATCATACTGGAGATCGGCCTTGGGCTTGTCCGCACTGTGATTACTCGTTCACGCAAAAAGGAAATCTTCTTACTCATCTGAAGCGCGTTCATCAAATGATGGATGAAGTTGATAAGAAGAAATTGAAGACTACTCAACATATTGTTAGTAAAGTTATGCAGAGTAATATTCACAGCGATAATGGAATTCCGAATTTAGATAATATTTCGCTGGTTGAATTGCTAGAGTAA
- Protein Sequence
- MKCDNSASDLSDKKPADTTSKSDILQQALKISGLSEKGKKPNADKTDSPKKVAKEDVQSSFVTLLDRTEGSLRRYVTIKQRSVGNTKWYSCSYCHKEFKKPSDLIRHLRVHTQEKPYKCSYCCRSFALKSTMIAHERTHTGTKNYNCGTCDKKFTCHSSLKAHTRTHTKPHKCNSCGKSFSTSAVLKSHMQNHAKKSKLSADAEALMPQIVLEEPLVISDAGDKISVAHVKSKQSGDDGKDSAGRPHKCWVCSAAFRKISHLKQHYRRHTGERPFKCPKCEGRFTSNSVLKAHLQTHEASRPYNCTVCNAKFSTQSSMKRHLVTHSNVRPFMCPYCHKTFKTTVNCRKHMKIHKTELAQKQLEKQKEKSAETVIHNKEPIPTLTENLTLPEDISDTFQPNMSSDFTQAFNDQFTTIDVDKNKSFLSDDNRTETIENLPEVTNPLDSTQTLHADETGTITLPNYTGDQTLSAESIREIEETLNQQLFNIGMNLGLGTNLSRQISETDVPLESRSQPILNIMYDSSKPLDSSESINTNIFPSHFDTFDMSQITLQATELDIGINSANSTSMASILPKSAQEAQRLVPVSCNKTEITSESRHLKDRHLIVNSIQSYPDLTKPVQSCPKYPKIIAQADTTNQSDLLVSNLNCESNENSVTSMENFNLTCSYCDRPFNSLEDLKSHVEGHLSGFPSSDSTTDNNNINIEEKVPENSKGGSLQCHMCSKKGFEVNSLKKHLLTHKGEKEFQCLECPLKFCTNGGLSRHLKIHNGKKIDSWTCSVCFVSFSTESHLKMHSSTHNKWNVHHIEPDSSQKDPLKIEPDLLINIEPDSAASVSEKLLFDTVVEQNFLKNSSNNSSGLPSSSSSNNSNNSNNSNNISGLLSSEKKEYDNKCKYCPKTFRKPSDLIRHVRTHTGERPYQCEHCDKSFAVKCTLDCHIKVHTGNEKFSCHVCNRLFATKGSLKVHMRLHTGSKPFKCSFCDLQFRTSGHRKVHLLTHMRDDKNSGKRKQKSGKIQVIPEVKIEGERELEESLVDNQFANLDTITIDATGLAEQLTFNPDGTILNNNSMLSVNESNQLVANLHFLIANGLVTIQTEENILPLTNNSNEGNNVSISVNNNNNGENQGANLEGSNLVIAQVNSLNSNSERFNDSCMTLVDSSNNSPVIIGLPAESSSLSGATSIISQKLTPKNNSNLNNKNSSSRECDICGKIFGKPCQVLRHKRIHTGEKPYKCELCSKSFAQRSTLQMHMKHHTGDRPWACPHCDYSFTQKGNLLTHLKRVHQMMDEVDKKKLKTTQHIVSKVMQSNIHSDNGIPNLDNISLVELLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00378202;
- 90% Identity
- -
- 80% Identity
- -