Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.6e-07 0.00018 21.5 0.0 3 39 49 85 47 89 0.86

2 2 1 1.1e+03 -0.2 0.0 16 23 156 164 151 166 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.6e-07	0.00018	21.5	0.0	3	39	49	85	47	89	0.86
2	2	1	1.1e+03	-0.2	0.0	16	23	156	164	151	166	0.76

Coding Sequence: ATTACAAAAAAAATTATTAACAAATCGATTAAAAACATGTCCAGAAAGTCAGTTAAGAGGTCATCAGTTAAAACGCATGTGTTAATTTCTGATAATATTTGTGTGAAGCCGCAGAAAAAAAGTCGAAGAATAAATTACAGCCAAGACAATATCGAAAAAGCTTTAAAAACTATGAAAGATACGGGAATTTCGTTGAGGAAAGCTGCTTCTATGTTTGGTATTCCCGTAGCGACTTTAGGCAGAAAAAAAAATGTTGACCCAGAAAAAATTAAATCAAAAACCGGCCCTGGAACAGTTTTTTCGAAGGATGAAGAAGATGGTATTGTTCAGTGGATATTGCATCGAGCTGAGATCGGAGCACCCGTGACAAAGAATAAACTATTAGATAGTGTAAAGAAATATGTTATCAGTATTGATAAGAAGAAATTTAGGAAACGACACCCGAAACTCTCAATCAGAAAACCGCAGCACTTGAGTACAAGCAGAGCGGCAGTTACTCAAGAAGATCTGCAAGATTGGTTTGAAAACAATAATAAATACTTAGAGAAAAAAAAACTATTACACATCCCTTCGACTAGAATTTTCAATTGTGATGAAAGCAGTATCCAATTGTGTCCTGACGCTGAAAGCGTGCTTGCTGCGAAGGGTACTCGTGCGGTCTACAAAGTTGTTGATGGTGATAACATGCCTAATGCTGAAAAGACAGTTCAAAGTGGTTTTAGAGGATCTGGGCTCTATCCATTTAATCCCAAAGCTGTTGACTACGATATTTTAAATAAGGGGAAAAAATCTAAACGAGCCCTCGAGAGTAACAGTGCCAAGATATCCAATGAGGTTACGGAAGAACAAAAATTTCTACACTCGGTCGAAGAAAATTTACCTCCAGATACACTCTCTGATTTTAAAACAGCAGCAAGCATTGGATCATGGACCGGTGAAGTTGAAAAGAAAGCCTTATTCGATTACTGGTTCAATATTTATAAAAAATCGGCGGGTATTTACAACAAATAA
Protein Sequence: ITKKIINKSIKNMSRKSVKRSSVKTHVLISDNICVKPQKKSRRINYSQDNIEKALKTMKDTGISLRKAASMFGIPVATLGRKKNVDPEKIKSKTGPGTVFSKDEEDGIVQWILHRAEIGAPVTKNKLLDSVKKYVISIDKKKFRKRHPKLSIRKPQHLSTSRAAVTQEDLQDWFENNNKYLEKKKLLHIPSTRIFNCDESSIQLCPDAESVLAAKGTRAVYKVVDGDNMPNAEKTVQSGFRGSGLYPFNPKAVDYDILNKGKKSKRALESNSAKISNEVTEEQKFLHSVEENLPPDTLSDFKTAASIGSWTGEVEKKALFDYWFNIYKKSAGIYNK

Sequence clustering based on sequence similarity using MMseqs2