Basic Information

Transcription Factor Domain

TF Family: Runt
Domain: Runt domain
PFAM: PF00853
TF Group: Beta-Scaffold Factors
Description: The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.7e-71 1.3e-67 225.6 0.0 2 129 17 144 16 144 0.98

2 2 1.3 1e+04 -3.6 0.0 107 123 265 281 253 285 0.64

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.7e-71	1.3e-67	225.6	0.0	2	129	17	144	16	144	0.98
2	2	1.3	1e+04	-3.6	0.0	107	123	265	281	253	285	0.64

Coding Sequence: ATGCATCTGCCAGAAGGCCCGCTAGGCATGGATAGCTTCAGCACCATCCACGACGCACTTCGTGCCTGCCACGGTGACCTCGTGCAGACCGGAAGCCCTGCGATCCTCTGCACCGCCTTGCCCACCCACTGGCGATCTAACAAGTCCTTGCCGGTCGCTTTCAAAGTTGTAGCCCTTGATGAAGTCAGCGATGGAACTCCGGTGATGATACGCGCCGGTAATGATGAAAATTGCTGCGGGGAACTCAGAAACTGCACCGCTGTTATGAAGAACCAGGTCGCTAAGTTTAATGATCTTAGATTTGTTGGGAGAAGTGGAAGAGGAAAATCATTTTCGCTGACGATACAAATCAGCAGCCAACCGTCGCAAATAGCTACTTACACCAAAGCGATAAAAGTAACCGTAGACGGACCTCGAGAGCCAAGATCTAAATCAAATTATCAATATGGACCTGGCTTTCCTGGACTGGGGCTGCTCAATCCCTGGATAGACGCTGCTTACCTAGGGCACGCATGGCACCTGCCACATCCTGCACTCATCAAAGGAGCAATGCCAATGCCGCCAGCGGATTTATTCCCTCCAGCCTTCACACCCAGTATGTTACCCTCAACGTACCCGTTCCACGAGCACGTAAAATTCCCGACGGAGTATCCGGGTATGCCAACGACGAAGACACCAGCCTTGCCAACGAGCCCATCTCGGAGTCCTCCAAGAAGTCCCAGTGAAACTAGCAGCGAATCTGAAGAAGTACGCAGTGCCTTTGTGCCGATTCGCCTCAACACGCTGTCTAACGTCAGCGTCAACGGTACCAACAATGTAATCGCCGTGACGAGTGACGGATGCAAGAGAACGCCACCAGCGACCCCTTCCAGCCCTCCGGTGAAGAAAGAAAGCGGACGTTGTGAGCTTAAAGCACCGACGAAGCTGTCTTCAGTGGCTTCTAAGCCCGTTTGGAGGCCTTATTAA
Protein Sequence: MHLPEGPLGMDSFSTIHDALRACHGDLVQTGSPAILCTALPTHWRSNKSLPVAFKVVALDEVSDGTPVMIRAGNDENCCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFSLTIQISSQPSQIATYTKAIKVTVDGPREPRSKSNYQYGPGFPGLGLLNPWIDAAYLGHAWHLPHPALIKGAMPMPPADLFPPAFTPSMLPSTYPFHEHVKFPTEYPGMPTTKTPALPTSPSRSPPRSPSETSSESEEVRSAFVPIRLNTLSNVSVNGTNNVIAVTSDGCKRTPPATPSSPPVKKESGRCELKAPTKLSSVASKPVWRPY

Sequence clustering based on sequence similarity using MMseqs2