Cfla006254.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia flavipes
Gene Symbol
-
Assembly
None
Location
scaffold:36251-41448[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0011 0.11 12.9 1.2 1 20 24 45 24 47 0.91
2 16 2.8 2.7e+02 2.3 3.6 1 20 55 79 55 81 0.82
3 16 0.00095 0.094 13.2 4.9 2 21 102 123 101 124 0.93
4 16 0.01 0.99 10.0 3.5 1 23 132 155 132 155 0.97
5 16 0.013 1.3 9.6 0.6 1 21 214 236 214 237 0.90
6 16 0.34 33 5.2 2.9 1 23 245 268 245 268 0.93
7 16 0.57 56 4.4 2.3 1 14 325 340 325 345 0.91
8 16 5e-05 0.0049 17.2 0.5 1 21 399 421 399 422 0.96
9 16 9.7 9.5e+02 0.6 0.9 1 7 430 436 430 457 0.75
10 16 0.019 1.9 9.1 1.2 1 21 503 525 503 526 0.92
11 16 0.24 24 5.6 2.1 1 23 534 557 534 557 0.91
12 16 0.0019 0.19 12.2 0.9 1 21 576 598 576 599 0.95
13 16 5.4 5.3e+02 1.4 4.2 2 23 607 629 606 629 0.93
14 16 0.0058 0.57 10.7 3.9 1 21 653 675 653 676 0.94
15 16 0.0091 0.9 10.1 1.5 1 23 684 707 684 707 0.95
16 16 0.05 4.9 7.8 1.7 1 21 727 749 727 750 0.95

Sequence Information

Coding Sequence
CTTAATTACCCCGGAATCTTCAGAAACTTCAAAACAAACGAAGAACTGTGCTTCGTAACAACCGGGCGCTTTGTTTGCTTGAACTCAAACTGCAACAAGACCTTCAAGAACAAAGAGTCCCGCCGTAAGCACATGAGCGACATCTGCAACAAGCCTCCAAGGTACAAGTGCGGCTACTGCCACTACCTCTCCCAATTCAAGAAGAGCATTCAGAGCCACAGCTTCCGACGGCACAAGGAGATGCCAGTTTTCATTAGAAAAATTTTGAGAAGGACGGCAGAAAAAAATCGAAAAGAGCGGATACGATGCACGAATTCGATGTGCGAGAAAACTTTTAAGCACAGGTATCATTTCAACCATCACATCAGATATAAGTGCAATAAGCCGCTGAGATACAAATGCGGACATTGTTTTCAAAAGTCTTACAAGCTGGCTAACCTAAAAGTCCACATAAAAAATCGCCACAAAAATTTGGAGGCTAAAATAATTGACGAGTATTATCAAACCGAGATAAGAGACAAGGAAAGGGCTATAAATCAATGTTTGTTTGCAGAAAAAAAAAAAAAGCTCGGCGAGCTGCTGTACACATACGAAGGCTTAAGCGCGGAAGGAACCCCGATCCAATTAACGGAACAGCGGTACGCGTGTTTGAACGCAAACTGCAGCAAGACCTTCAAGAACGAGCGGAATCGGAACGACCACATGAAGAACTTGTGCAACAAGCCCTCTAGGTACAAGTGCCCGTACTGCATGCGCAAGTCCCACCACTCCGCGGACATAAAGCGCCACCTTGCGGCTAAGCACAAGAACATGGAGATGAAGATCGTCGAGCTGTACAACCCGCACCTAGAAGCTCGAAAGCATCAGTGTCCTAACCCCAATTGCAACAAGAATGCGACAAAGCGCCGAGATTCAAACTATCATTACTGCAATGTAAAAGCGGAACTTCACATGTCGAGAACTACCACCAGGTTCAAATGCACCCATCCGAACTGCACGCGGACTTTTAAGAACAAAACGGAACGTAACTTCCATTCTAAGAACATCTGCAACAAGCCGCTCAGGTGGAAGTGCGGACACTGCGACTACAGGTCCTTCTGCGCAGGTCACATTCGCAGACATTCTCGTTCCAAGCACAAGAACCTCGAACCTCAGCCTATTGAGCTCTACAATCCGCATCTTGAAACGCGCAAGTATAGGTGTCCGAACCCGAATTGCGACAAGAAGTACAAACAGAGGGCTAATTTGGTCAATCATATTAATCATGAGTGTGATAAGGAACCGAGATTCAAGTGCTTCTATTGCGATTTCAAGAACGCTTTTGAGCCGAGGATTATGAAACACTGCAGGGATAAACACTCGCTTCAAGTTCCGAGGAATTTTTTCCAATGGCAAGCGTGGGTCAAAGGAGAAGACTACAGCCAAGAAGTGGCTCAGGAGCCTCAGGAACCTCAGGAAATAGAAGAAGACCCTCTGGTTCCAGTCACAAAAAAACAAAGTTCCAGGTACAAGTGTCTGACCCCGAACTGCCCGACTACTTTTAAGAACAAATCCGAGCGGAATTATCACACCAAAAATGTCTGCAACAAGCCGCCGAGATTCATCTGCGGCTACTGCGACTACAAATCCTTCTTTGCGGGGCACATTAGGAGACACTCTAGGGCCAAACATCCGGATCTGGAACCGCGGGCAGTTGAGTTGTACGAATTAAAAGACGATCGCAGTCACAAGTGCCCCAAGCCTAATTGCGACAAGAGGTACAAGTACAGAAAGGGCCTGAGTGCTCATTTGATGTACGAGTGCGGGAAACCCGGGCTCAAGTGCTCCTACTGTGATTTTAAAAATAATTATAAACATTTGGTGAAGAAACACTGGAGCAGGCAACATCCTGATTTGGAATTTAGAAAGCCAAAGCGCGCAAGCAGAGCAAAGAAGAAAAGCATGGAACTCAAGCCTTTTCCGTGCACGAATCCAAACTGCGACAAGAGTTTCAACACCAAGCACGACTGTAACAAGCACATGAAGTACTTCTGCAACCAGCCGCCGCGGTACAAGTGCGGGTACTGTCCGCAGACGTCTCACCAGTCCGCGGATATAAAGAGACATCTGGGAAGAAAGCACAAGAGTCTGAAGATTCAGATTGTGCAGTTGTATGATCCTCATACTGAAACAAGGATTTATTCTTGTCCGACTAAGAATTGTTACAAGAGGTACAAACATGAGCGTGGGTTGGCTTCACATTTGAAGTTTGAGTGTAATAAACCGCCAAGGAATGAAGATCATTCGGGTGAAAAAGCGAGCGCCGAAAAAGAAAACTGGAAATTTTTGCAAAATTACGGAAGTAAGGTTCGCATGTGCGACTCCCAATTGCGACAGGACCTT
Protein Sequence
LNYPGIFRNFKTNEELCFVTTGRFVCLNSNCNKTFKNKESRRKHMSDICNKPPRYKCGYCHYLSQFKKSIQSHSFRRHKEMPVFIRKILRRTAEKNRKERIRCTNSMCEKTFKHRYHFNHHIRYKCNKPLRYKCGHCFQKSYKLANLKVHIKNRHKNLEAKIIDEYYQTEIRDKERAINQCLFAEKKKKLGELLYTYEGLSAEGTPIQLTEQRYACLNANCSKTFKNERNRNDHMKNLCNKPSRYKCPYCMRKSHHSADIKRHLAAKHKNMEMKIVELYNPHLEARKHQCPNPNCNKNATKRRDSNYHYCNVKAELHMSRTTTRFKCTHPNCTRTFKNKTERNFHSKNICNKPLRWKCGHCDYRSFCAGHIRRHSRSKHKNLEPQPIELYNPHLETRKYRCPNPNCDKKYKQRANLVNHINHECDKEPRFKCFYCDFKNAFEPRIMKHCRDKHSLQVPRNFFQWQAWVKGEDYSQEVAQEPQEPQEIEEDPLVPVTKKQSSRYKCLTPNCPTTFKNKSERNYHTKNVCNKPPRFICGYCDYKSFFAGHIRRHSRAKHPDLEPRAVELYELKDDRSHKCPKPNCDKRYKYRKGLSAHLMYECGKPGLKCSYCDFKNNYKHLVKKHWSRQHPDLEFRKPKRASRAKKKSMELKPFPCTNPNCDKSFNTKHDCNKHMKYFCNQPPRYKCGYCPQTSHQSADIKRHLGRKHKSLKIQIVQLYDPHTETRIYSCPTKNCYKRYKHERGLASHLKFECNKPPRNEDHSGEKASAEKENWKFLQNYGSKVRMCDSQLRQDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-