Basic Information

Insect: Cotesia flavipes
Gene Symbol: ci
Assembly: None
Location: scaffold:119-13555[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00018 0.017 15.5 0.3 3 23 295 318 293 318 0.94

2 5 0.046 4.5 7.9 0.1 1 23 326 353 326 353 0.86

3 5 0.00012 0.011 16.1 3.0 1 23 359 383 359 383 0.98

4 5 0.00018 0.018 15.5 0.4 1 23 389 414 389 414 0.97

5 5 4.2e-06 0.00041 20.6 0.3 1 23 420 445 420 445 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00018	0.017	15.5	0.3	3	23	295	318	293	318	0.94
2	5	0.046	4.5	7.9	0.1	1	23	326	353	326	353	0.86
3	5	0.00012	0.011	16.1	3.0	1	23	359	383	359	383	0.98
4	5	0.00018	0.018	15.5	0.4	1	23	389	414	389	414	0.97
5	5	4.2e-06	0.00041	20.6	0.3	1	23	420	445	420	445	0.97

Sequence Information

Coding Sequence: ATGAGAAATCCGAGAGTGGTTCGAGGTCTGCTCGGCGGATCTTTGAAGATGCACTTTAAATTAACAGGAGGCTCTCCAGCGATCGGTAGTGCAGGTAGTCCAGGGTGTGGAACGCCAGGCGGAAACGCTGGAAGTGGTGATCCGGGTTCCGGAACTCCCGGAGTAAATGGTTCTGCGACCGGTGATTTTTTCCGTCGTAGTCACCCACTTTCGGACCATACGCCGTTGCACCCAGCCTACCGTATTAACTACATGGACCACATTTACCACCAGATACAGGCCTCTTCTCACAGTCCCAACGCCTCATTACACGGGCTGGGTGGATTGGGGCCAGAGTATCTACTTCACGCGGCTGGACCAGCGAGTACTCTAGCTTCTTCAGAGTTTCCTTTTTCCATCGATGGTAAGAGTCCAGCAATGAGTCCAGCTCTGAGCATGCACCCAGGAATGGCGCCGCATCTCCAACAACTGCAAGCACACCTTCTCCGAAACGCAGCGGTGGCAGCTCTGATGCCTCACTCTCTCCAGCCACCGGCGCCGCCACCACCCCATCCGCACAGCCACCCTCATTCCCACGGACTTACGCCTCACAATCAGCTCTTCGTTCCTCCACACTCGAGTGCGACGACCACCGTGGGGCCTCACCATGGTGTCCTGCCCTCAAAAACAGAGGGTACGGAGTCCTGCAGAAAAGGATCAGACGCATCAACAAGATCGATAGCAGCTGAAGCAGATACATCGTCAAGAAGACAAACGAAGGTGAAGCGGGAACCAGCAACGACAACGACGGCAACTTCGACGACCCAGCCGGTAAACCACCCCCAGGGTCTAAGTCCCAGCGAGGACTTGAGAGACGAGCCGGGAGATTTTATAGAGACGAACTGCCATTGGCGAGACTGTGGTCTCGAATTCCCGACTCAAGATGATCTCGTAAAGCACATCAACAATGACCATATTCATGCAAACAAAAAGAGCTTTGTTTGCGGATGGGAGGATTGTTCCAGAGAGGAAAAACCATTCAAGGCCCAGTACATGCTTGTCGTTCACATGCGACGGCATACAGGTGAAAAGCCCCATAAGTGCACGTTCGAAGGCTGCTTCAAGGCGTACTCGAGACTCGAGAATTTAAAGACGCACTTGAGATCTCATACCGGTGAAAAACCTTATACTTGCGAGTATCCAGGTTGTAGTAAAGCTTTTAGTAATGCCAGTGATCGAGCTAAACACCAAAATAGAACTCATTCTAATGAGAAACCGTACGTATGTAAAGCACCAGGATGTACTAAAAGATACACGGACCCATCCTCACTTCGAAAACACGTGAAAACAGTCCACGGCGCTGAATTTTACGCGAACAAGAAACACAAGGGCGGAAACGACGGCGGAGGAAGCGACGAAGCGGGAGCTGGAGGCAACAGCCCCAGCAGAAGCGAAGATTTGCATCCGAAGACGCCAAGCCTGTCGAGCCCGAGCGTAAAGTCCGAGAGCGAGGCAAACAGTCCTCCAGGAATGATCCAGCAGCAAGGCAGTCCGCTGGTTGGTGGATGCACCGACGAAATGGCGGGTGTTGGTGGTATAGCGGTCGACGCGGTGGTTTTCGACGAGCCCTGGAGCGAGGAGCCGGACAATCTGGACATCGCGGACCTGCCCGTCCCCCTGCGCGCGATGGTCGGCGGAATGGAGACTCAGCAGGCGCCTCCACACTCGCGGAACCGCTTGAAAGGCCGGCTCAATGTCAAAGCCATGCCTTCTCTGGCGCCGGGAGTTGGACTTCGCGGTACTCGCCAGATTTCTCAAGGCATCGGCGACCTCAACCGCAGAATCACCGATCTCAAGATGGAGACTGGCACTACAAGGCAGACCAGTCTCGCGGATCTCCAGCTGAGGCTACAGCCCCGCAGCGAGCCTAGACGCGACAGCAATTGCACCGTCAGTACTTATTATGGCAGCATGAAGTCCACGGAGTTCGGTAGCAGAAGAAGCAGTCAAGCCAGCGCTGTTGGTGCTGTCAGAATTGGACCTGCCGGTCCTGGAAGCTTCTACGATCCAATTAGTCCTGGGACTTCCAGAAGGAGCAGTCTTATGAGTCAAATGAGCGCCACTTCCGGGAGAATTAATCCTCCTGGGCCGCTTCAGATTCAATACAACACCAATAATCTTGTTGTACAAACTCAGAATATGTCTTTGCAGGGCGCTCAACTTCTTGCCAACGAGTGGCCATCAAGCAGCAACTGTCTCCCGCAGCCGTCAGGTGACCGCAGAATGTCAGAACCAACTCGAGGATACCAAACCCAGCAAACATCACCACCAGTGCCGCCTCGCCCTCGATCAGCGCAACTTCCGGAGCTGCACCCGAACCAAGAAGTAGTCTTAGACGAAGTGGGTGAAGGCGAAATGGTGGAGAACAAACTGGTGATCCCGGACGAGATGGAGCAGTACCTGAACGCAGTGCAAGCCAACGGGCAGATAAACTTCCGCGGGAGTCCTCTTCCAATCTGCCAATCCCCAATCTGCACAAACCACCTGCACTACCCTCGCCAACAAAACTGCTACAACATGCAGCAATGCTACCCTCAATCCCCTCAAATGCAGCCTCAAGCCCAGCCTCAGATCCAGAACTGCCAAAATTACCAGGCCCCATCTCCAGCTTACTCGCACTGCCCGAGTTCCCGCATGAGCCAGGCGTCAGGCTACTGTCCTCCGCAGAACTACAACCAGGTTCAATCCTGCGGCTCGCAGATGCAGCCAAGCCCCGTCAGCCAGGTGATGTCTCCCGGGTCTCACTACGCCGCCAGTCAAATAAGCGACCAGCCGATGACTTCTCCAGCAGCTGGAGCTCTGCCTCCTCAGCATGGAATGCAGAATCTCCAGCAAGCTCCAGCCCAGATGACCCGGAACTGCAATCAGCAGAACCACCAAGTATTTTATCAGTCTTACGGATGTCAAGGTCAAGTCGCCAATAATTGTCCAGCTCAGCAGCCTCCAAACTGTTCTCCAGTGGCGCACTCTCCCGGATTGGTCCAGCCTTGCGCTCAGATGAGGAACTGCCCCCAGATGTCGCCGCACTGCACACAAGTTCCGAGTCCTGGGCCAAGAATTAACTTGCACAACAATCAGTGTCCAAGCCAGCAAGCTCAGAGCCAGTGCAATCGCGGGAACAACCACCTGATGAATGATCTTCAAGTGAGAAACGTCCTCCCGGGGACTGACCAGATCCCGGTCAACGGTCAAGGTCAAGGCCAATGTCCAGGCGCTACTTTGCAGCACTGCGCTCCCGGAACGGTCAAACCGGTGGAGAATATCCAGCTGAATCAGAACCAGAACCAGAACCAGAACCAGAATCAGAATCAGAATCAGAATCAAAATCAAAATCAGAGCTCAGTGCAGAACAATCTCCAGTGCACTCAAATCACTCCGAACTGCTCCCAGTGCGGCTGCGAGGCCCAATCTCAGACCACGCAGACTCAGTATGTATGCAATTGTCAGTGGAATTACGGCGACTGCTTCAATGGACACAACATGGGAGAGATTCAGTGCAGGGATATCAGCCAGTCCCAGCAAGGATCTCCGGTCAAACCTCCCCAGGGGATGAGGCAGGACTCCTACCGCAGGACTCTCGAGTATGTTCAGCAGTGCCGCAATTGGTCCGGGACTCAGGTTCATGAGACCAGTGTGTCTAGCTCTACTCATCCGCTGTCTCTTCCTCAGCCTCTCCCTGCTAGCTCTAATATGGTTGTTAATGATATGACTTCTTCGCTCAGCTCTTTGCTTGAGGAAAATAGATTTTTGCAGCAGATGATC
Protein Sequence: MRNPRVVRGLLGGSLKMHFKLTGGSPAIGSAGSPGCGTPGGNAGSGDPGSGTPGVNGSATGDFFRRSHPLSDHTPLHPAYRINYMDHIYHQIQASSHSPNASLHGLGGLGPEYLLHAAGPASTLASSEFPFSIDGKSPAMSPALSMHPGMAPHLQQLQAHLLRNAAVAALMPHSLQPPAPPPPHPHSHPHSHGLTPHNQLFVPPHSSATTTVGPHHGVLPSKTEGTESCRKGSDASTRSIAAEADTSSRRQTKVKREPATTTTATSTTQPVNHPQGLSPSEDLRDEPGDFIETNCHWRDCGLEFPTQDDLVKHINNDHIHANKKSFVCGWEDCSREEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGGNDGGGSDEAGAGGNSPSRSEDLHPKTPSLSSPSVKSESEANSPPGMIQQQGSPLVGGCTDEMAGVGGIAVDAVVFDEPWSEEPDNLDIADLPVPLRAMVGGMETQQAPPHSRNRLKGRLNVKAMPSLAPGVGLRGTRQISQGIGDLNRRITDLKMETGTTRQTSLADLQLRLQPRSEPRRDSNCTVSTYYGSMKSTEFGSRRSSQASAVGAVRIGPAGPGSFYDPISPGTSRRSSLMSQMSATSGRINPPGPLQIQYNTNNLVVQTQNMSLQGAQLLANEWPSSSNCLPQPSGDRRMSEPTRGYQTQQTSPPVPPRPRSAQLPELHPNQEVVLDEVGEGEMVENKLVIPDEMEQYLNAVQANGQINFRGSPLPICQSPICTNHLHYPRQQNCYNMQQCYPQSPQMQPQAQPQIQNCQNYQAPSPAYSHCPSSRMSQASGYCPPQNYNQVQSCGSQMQPSPVSQVMSPGSHYAASQISDQPMTSPAAGALPPQHGMQNLQQAPAQMTRNCNQQNHQVFYQSYGCQGQVANNCPAQQPPNCSPVAHSPGLVQPCAQMRNCPQMSPHCTQVPSPGPRINLHNNQCPSQQAQSQCNRGNNHLMNDLQVRNVLPGTDQIPVNGQGQGQCPGATLQHCAPGTVKPVENIQLNQNQNQNQNQNQNQNQNQNQNQSSVQNNLQCTQITPNCSQCGCEAQSQTTQTQYVCNCQWNYGDCFNGHNMGEIQCRDISQSQQGSPVKPPQGMRQDSYRRTLEYVQQCRNWSGTQVHETSVSSSTHPLSLPQPLPASSNMVVNDMTSSLSSLLEENRFLQQMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00379184;
90% Identity: iTF_00379184;
80% Identity: -