Cfla005384.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- Polr3h
- Assembly
- None
- Location
- scaffold:5207-16690[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.56 55 4.5 0.6 5 23 420 438 419 438 0.95 2 11 0.00086 0.084 13.3 0.8 1 23 475 498 475 498 0.97 3 11 2e-05 0.002 18.5 0.4 2 23 505 526 504 526 0.97 4 11 5.1e-05 0.005 17.2 3.3 2 23 533 554 532 554 0.96 5 11 1.7e-06 0.00017 21.8 0.7 1 23 560 582 560 582 0.98 6 11 1.4e-06 0.00014 22.1 1.5 1 23 897 919 897 919 0.97 7 11 0.00023 0.023 15.1 0.3 1 23 926 949 926 949 0.93 8 11 5.1e-05 0.005 17.2 0.1 1 23 957 980 957 980 0.97 9 11 1.7e-06 0.00017 21.8 3.0 1 23 986 1008 986 1008 0.99 10 11 0.00016 0.016 15.6 6.1 1 23 1014 1036 1014 1036 0.98 11 11 5.7 5.6e+02 1.3 0.4 1 10 2233 2242 2233 2247 0.82
Sequence Information
- Coding Sequence
- ATGGAAGAATTAATGTCAACTCCAATTAAAAATTCGCTGAAACGAGAGTCATCATCTCCAATGAGCCCAGTGATTTATAAAACACCTTTGAAGCAGTTTGAAGCTCGGAAAAATTATAACAGCAATGATAGATCAAGAGGAATTTCTATGATGCCTAATCATTGCACTCCACCCTCAGGTTTGACTAAATTTATTGCCAGAAATCCATTTGATGCTGAGCTTACTAATCGACTTCATATGTCAGTGCCGACAAAAACACATGATTCTCCTTTTTCATGGACAATCGATGAGTTGGCGACGTTGAAACCTGTAGCAATTGAAGAGTTTTCTCTCCAGCAGTCTCACACCTCTGACCCGGAAGTCGAGAAGAGAGCCCAGGAAGCTATAAATAAATTTTTTAGTGCTAAAGAAATTCATCCGAGCCCGTGGAACGAGCGGCGAGAATCAGTTAACCAGCTTATGACGACTCCTGGTAGCTTGATCCAGGAAATCGATAGTGAAACGACTGAAAAAATTACCAGAGATTGTTGGGCACAAACAGAATTGTCTCTTCCACCAAAGCTACCTCAGCATGTCGAAGATGCTCTAAAACCATACTTTACTTTTACACAAGACCAGCAGGAAGGATTAAGTGATATGCAGAGGACTTATGATACATCATTTAGACCAGATAAATTAATTTCACCACCGGATATGTCACCGATATGTAATCCATTAAATAATTTAGCTAATAATAGTCTTCGGTCGCGTAAATCTGTGACGCGACTTGATTTCTCTATGCATATGAGTGTTGACTGCTCGTACTTGGAGGAAAAAGAAAATGATAATCCTCAATTGGCTGCTAATCAAGAAACTCTTAATGATACAATGGCTGATTCAGTAATTGAAAGCAAAGAGTACAATCAAAACGAAACAGTTGAAATGGTTTCTTTGATCCAAGAGACTACGCCACAAAAGCAATCAACTAAAATTGACAACGTTATTAAATTTAAAGATTCAGTGGATTGGTGTAAGAATGTTACTAATGAAAGCTACAAAGGACGAAGAAATTTCACCTCTGGTGGAGTTTCGGATCAGAGCACCAGTGCCTTTACTTCTGTACAAGACACTGGCTATCAGACTTATAGTATGAACAATACTGCTAATACCAACACTACAAATAACCGTAGTTTTACTCCTGTCAAGAAAGGGTTTAATTGGGACAATCGTCACGCAGGAATGTCATCTGTTAATGAAATAAGACTGTCCGATTGGCAGGAATGTGATAATTTTTATAAAAATGAACACGAGTATTTAAATCACATGCAATTGCACTGGGGAGAAGTTTGGAAATGCTTGCAGTGTGATGACAAATGCACGTTGTTTAAATCACAAGTTGGATTAAAGGAACACGAGGGTTTGTATCACGGTTCAGACAAACCGTTCAGATGTTCAAAATGTAAGCTAGTATTTGATCGAGTTTCGCAGCTGGACTACCATGTGAGGAGCATTCACTTGGGGGAAAAATCCCAAGTATGTCAGCTGTGTGGAAAAGGATTTTTTCGCAAAGCTGACTTGAAGACACATCTCAATGTTCATCTTGGTACCAATCAATGTATTTGCGAGTTTTGTGGACGTCAATTTAATCATATTTCTAATTTGATACGTCATCTAAGGATTCATGAAGGAACTAAACCATACCGATGTTCTGTGTGCGGTAAGCGATTTACTCAAGTCAGTTCATTGGCACGACATAAATTAATTCACGAACGAAATAATGAACCTACAAATGATGAACATGGACAAATAAATTTTCAGACTGTTACGAAAAATAAAACAGCTAAACGTAAGTCTGTGTTGCAGAATGAAGATAAAACAAGAAATTCATGTTTTAATGCTGATAATTTTTTGGAGCGCATTGATCCAGTCCGCGATGAAAGTATTGACATTTCTGATATCCTAAGTCCTTATTGTAATGAATTGGAATTACCAACGACAGATCTTATGCAGCGCGAAGACGTTGGAACTGAAATGGTTAAGAAATTTACAAATTTAGAAATTTCAAATAGAGAAATACGTAATAATAGTGTTAATAATCCAAATTGTGTTCACATAGAGAAAAATCAGTTTTTGATAGAAGTTTGCGAGTCTGATTATTTAAATAATTTAGGACTTAATTCATTGGAGCTGCATGACAATGTGATATTACCCGATAATCATTTTAATAATATAAATTACTGCGTTGATAAATCATACACACTGCCAATAGCAGTTGTCGACAAAGATTTAAATGAGCAGTGGGATTTGCAGTCGACAGTTAATTCAGTACTTGAACAATTGAAAGATACCAGCATTAATTTGTTAGAAAATTTTCAATTACAGCCGATAGATCAAAATCCCGAGGGTTATCGTGGGTCCGATGATCTGGTTGCAGATTTTAACAACGAGGAAGCCCAGACTCAAACACCGTTGGTACGGTTGGTACAAAATGAGGAAGGAGAACAGTTTTTTGAACTAGTCCGTGATACTGTTAACTTTGAGAGTCATGATAATAATTTACAAAATCAAAATCAAAATCAAAATCAAAATATTTTCTCGGGAGTCACTGGTCAAGCGGTGGCTTCCGTCACTGCTGATAGCGTTCGTAAAAAACGGTGTAAGCCAAAATCGCAAGATAAGGTGCGGATAAAAGATTTGGTGAAACCGAAGTACCGATGCACTGTTTGCAATAAATCTTTTTCTTCGACTTCAAACTTGAAGCAGCATGCAGGAACTCACTCGGTTGATCAACAAAAATTCCAGTGCAAACAGTGTGGAATTTCTTTTGCTTGGAAGTCTACGCTTAATAAACATATTGCTGGTAATCATCGGCCTGATGGACCTTTGAAGTTTGTTTGCGAGATTTGTCCAAAGGTTTACAGTACTTTGTCTCAAGTTAATGAACACGTCAAGAGAGATCATTTGAAGGAACGTAACTTTAAATGTTTAGAGTGTGGCAAATCCTTTTTTAAGAAATTTGATTTAAAGTCTCACATAAGAACTCACACGAATGAACGACCGTATGCTTGTAAAACTTGTGGAAAAAGCTTTCATCACCAAAGCCACATCATTCGACATGAGCGAGTTCATTCTGGAGAAAGACCTTACACGTGCGATATCTGCAAACAAATAAAGAAAAAAAAAATGTTTATTCTCACAAGATTTAAAGATGTAGTTAAAATATCTCCAAAAGATTTTACGGGGAATTTTAATGATGCCATAGCAAAAGAATTGAACAACAAACTTTCCAATAAAGTATTCTTAAATATCGGCCTCTGCATTACTTTGTTCGATATTGAAAAAATAGAAGAGTCTTTTATTTTTCCTGGCGACGGATCATCTCACACAAAAGTCGTCTTCCGGTATGTCGTCTTCAAGCCTTTCAAAGAAGAAATCCTCATTGGAAAAATTCGTAGCTGCAGTGAGGAAGGTGTCGTAGTGAGTCTTGGATTTTTTGACGACATCATAATTCCTCCATCGAAGCTTCAGAGTCCGTCGAGATATGACTCTAAAGACAGAGTTTGGATCTGGGAATACGACGTTGGAGATGGTAAAACTCATCCCCTCTATATGGACCGCGACGAGCTGGTGCGATTCAGAGTTTATGAGTCTAAGTTCTTTGAAACACCGCTTCCTAAAAGTACAACTAATGAAGGGACTCAACAGCCTGAGGAAAAAATTTCACCCTATGTTTTAGAGGGTGCTGTCGACGAGCCAGGGTTAGGTCCACTTTCCTGGTGGCTGCCCTCCGATGAAAGCTCAGAATATATATTTATGATGGAAAAATGCAATAATACAAGAGGACTAACGACAAATAGACGATATCCACTATCAGTTGAGAATAAAATATATGACAATGATAATGACAAGAATCTAAGTAGCGTTAGTGATAAATATAATAATAAAATATATGATAAATTATTAAATATAACTTCAGACTGTGACAACTCGCAAAATTTTGTATTGCAAGTAACAAACAGTATTTTTGTAAAAGAAACTTCCGATGAAAATAATAAAAATACACAAGAAGTTATAGTAATAAGCGACTCGAGTGATGATGAATCATTTTCGCCAGCAAATAACAAAGGTAATAAAATTTTGCCGCAAAATAAAAATGATGAGGCTGCTAAAAGAACCCCATCATTGACTATCAGTAGTATAAATTCTTCTGATATTTTGACTGAAGACGAGAGTCATAAAAAATCTAAAACAAACTATATATTTACATCAACTCAGCTGAACAATGATGATAGAAGAAACAATGAGTTGGTGTCCAATGACAGTGGGAATGGCACCCCACGTGGGTTTAATTATTTTTCGGAAAAAGAATTAAGAACGCCAACTATAAATAAAATAATGCATTCGGAAAGTCCGGCTAAATTGCCGAACCAAATCCCGAGGAACACGAGCGCTGATCGGAAAAAGCGCGAGCCAATGAGCGATAAGCGTGAACGTGTACTAGCAGGGACAAAGGGCTCAAGTGGTGACAAAGTCTTGAGTAAACAAACTAATGACGCTCGCATAACTCCGAGTTACACCAAACGAAATCCATCGACGCCGGTAAATAAAAAAGCAACGCGTGAGATATTAAAAGCCGTTAAATCGCAGCGCATTGTTTACGATTCTCCGGGACAGTGGCAGAAAAATAAAGCTCTGCATAATTATAATTCACCGGGGCTGATGCGGGACCGGGACATAGTTGACAAGTCTGAGTTGGAAACCAGCTATTCATCGAGCGGAAGCAAGAAAGAGGATAAATCGGAATTTCAGCATCCGGCTTGGATTGACGAAACTACTTCGGAGATATCGGACGACCAGGAAGATCATTGCGATAATAATAAAGAGGAAGATTGTCAAAAACCAGACAAGCCAATAAATGTTACGGAGACACGTGTTATTGGGTATCTTAATCCCATAGAACGTCAGTCGTTGTCACCAAGTGAACGTAAGAAGGAAGATATCGCACGCTGGTTGATGTCTACTGCCTTTGACCAAAGAAGTGACACTTCTTTGAGCGTCATCGGTCCTTCTCAGCCAAATAGTCCTGGTTCTGGTAACAGCAGCCTTGAAAGACTCGAGCAGCATTATCAGACTCCGAATAATCGCACCAAATTTCAGACGAAGGTAAATTCAACTACTAGCGGTAAAACTAAAACTAATGACAACACTCCGATTACTGGAGGACAATTGAAACAGCTGGAGTCTGTGCAGAAGACAAATGTCAATACGCCGAGCACTGGAGGTGATGTTAAACGTTTAGAGTCAGTTTGGAAGAAAAATGACGGAGGAAATTCAAAACCGACCACGTTTAAAGCTAATACACCGAGTACTGGAGGCAATTTGAAATGTTTAGAACCATCAGTTTGGAAGAAAAATGACGGAGGAAATTCAAAACCGACCACGTTTAAAGCTAATACACCGAGTACTGGAGGCAATTTGAAACGTTTAGAACCAGTTGATAAGAAAAATATAAACACCCCAAGCACTGGAGGAAATTCTAAGATCTTAAATAAACCAGTACAAAAAACAATGGATAATTTTATGAAGAAAACGAAACCTAGATCTAGAACACCTAAAAATTTAACTCCTCTTTCTATAACGAAGACTGCAACCAACACTAATACACCTAGTTTGAGGATTGAGGACTGTGAGGATCTTTTAACTCGGCTTTATGGTGATTCCTGGCGCAAGAATGCTGATGCTCTGCTACCCAAAGAACCTAGAACAGCACCGCTAACTGATAAAGTAAAAAAGAAAGTTCGTGACAGTACAAGAAGAAGGTCTGATAAAATTGTCAAGTCTATAAAGCCTGGTATTTCCCGGACAGAGAAAAAAACGAGGAATATACGGGACAGTTTTATCAACGACTGGCCTAGCTCTGAAGACGATGCTGTTGAAACTTCTTTTGTCACAGCGTTGAGTACTCCTATTCCACCAAGTCACACCATCCGACGTAAAGAAACTCCGATGTCTGAGGTGCAGAAAAAAGTTATCGAGCTCTGTGATACGGACTCTGATGATGATAAAACTCCGGTGGTTAAAAACACCAGGAAAAGATTGTCTTTTGGCGATGACAAAAGCTCTGGATCTTTCACGAGTGAATATGACCCTGGTGAAGTTATTTTACCGAAGCCTGTGTCAAGGATTAAAAATCTGCCGACGAGTAAATCATCACCTAAGGTTTTTAAGCAACCTGCTGTGACAGTGAGCTTTATCAAATCACTGTCGAAGGAAGTGCCATTGGAGAAAGTTCACCCGGAAGCCAAGAAGTATAGGTTGAATTATAAATTGACTAAAGATGAACTTTGCCAGCGATTGTTCAAGATTTTTAATGAAAAAGTATTTGATTGTCAATTACCAAAGGACATGTCTATTGAGTGGAACGCCAGAATGCGCAGAACCGCTGGATTTTGTTACAACAAAATGATCAGAAGCGCTATAGGAAAGCCGGAAAGATCTTCGCGTATTGTTTTATCAACTAAAATTTTGGATGAGCCTAATAGGCTTAGAGATACGCTTATTCATGAGATGTGTCATGCTGCTACTTGGTTGATTAATGAAATTTCTGATGGACACGGGCTTTATTGGAGATCTTGGGCTTCTAAAGCTCTTAAAGTATTTCCAGAATTACCGCCTATTACGCGTTGTCATGATTATAAAATTACAACTAAATACACTTATCGGTGTGTTGATTGTGGATATAGTATTGGACGTCATTCAAAGTCATTGGATATTTCTAGAAAAAGATGCGGTCATTGTTTTGGAAAATTTGAATTGCTGGTCAATCGGACAACTAGATCAGGTAAAGTAGAACTTAAAACACCTAATGCCAAACAACCCAGTGGGTTTGCTCTGTTCGTAAAAGAAAATTACGATAGCCGACGTGCTGTTACAACTGGTCCGAATGGTGTTCATGTCGGTACATTGTTTAAAAAGAAGGACCACGTTGTTGTGTCCCCAAGTGGTTTATTGCAGTGCCCGTGA
- Protein Sequence
- MEELMSTPIKNSLKRESSSPMSPVIYKTPLKQFEARKNYNSNDRSRGISMMPNHCTPPSGLTKFIARNPFDAELTNRLHMSVPTKTHDSPFSWTIDELATLKPVAIEEFSLQQSHTSDPEVEKRAQEAINKFFSAKEIHPSPWNERRESVNQLMTTPGSLIQEIDSETTEKITRDCWAQTELSLPPKLPQHVEDALKPYFTFTQDQQEGLSDMQRTYDTSFRPDKLISPPDMSPICNPLNNLANNSLRSRKSVTRLDFSMHMSVDCSYLEEKENDNPQLAANQETLNDTMADSVIESKEYNQNETVEMVSLIQETTPQKQSTKIDNVIKFKDSVDWCKNVTNESYKGRRNFTSGGVSDQSTSAFTSVQDTGYQTYSMNNTANTNTTNNRSFTPVKKGFNWDNRHAGMSSVNEIRLSDWQECDNFYKNEHEYLNHMQLHWGEVWKCLQCDDKCTLFKSQVGLKEHEGLYHGSDKPFRCSKCKLVFDRVSQLDYHVRSIHLGEKSQVCQLCGKGFFRKADLKTHLNVHLGTNQCICEFCGRQFNHISNLIRHLRIHEGTKPYRCSVCGKRFTQVSSLARHKLIHERNNEPTNDEHGQINFQTVTKNKTAKRKSVLQNEDKTRNSCFNADNFLERIDPVRDESIDISDILSPYCNELELPTTDLMQREDVGTEMVKKFTNLEISNREIRNNSVNNPNCVHIEKNQFLIEVCESDYLNNLGLNSLELHDNVILPDNHFNNINYCVDKSYTLPIAVVDKDLNEQWDLQSTVNSVLEQLKDTSINLLENFQLQPIDQNPEGYRGSDDLVADFNNEEAQTQTPLVRLVQNEEGEQFFELVRDTVNFESHDNNLQNQNQNQNQNIFSGVTGQAVASVTADSVRKKRCKPKSQDKVRIKDLVKPKYRCTVCNKSFSSTSNLKQHAGTHSVDQQKFQCKQCGISFAWKSTLNKHIAGNHRPDGPLKFVCEICPKVYSTLSQVNEHVKRDHLKERNFKCLECGKSFFKKFDLKSHIRTHTNERPYACKTCGKSFHHQSHIIRHERVHSGERPYTCDICKQIKKKKMFILTRFKDVVKISPKDFTGNFNDAIAKELNNKLSNKVFLNIGLCITLFDIEKIEESFIFPGDGSSHTKVVFRYVVFKPFKEEILIGKIRSCSEEGVVVSLGFFDDIIIPPSKLQSPSRYDSKDRVWIWEYDVGDGKTHPLYMDRDELVRFRVYESKFFETPLPKSTTNEGTQQPEEKISPYVLEGAVDEPGLGPLSWWLPSDESSEYIFMMEKCNNTRGLTTNRRYPLSVENKIYDNDNDKNLSSVSDKYNNKIYDKLLNITSDCDNSQNFVLQVTNSIFVKETSDENNKNTQEVIVISDSSDDESFSPANNKGNKILPQNKNDEAAKRTPSLTISSINSSDILTEDESHKKSKTNYIFTSTQLNNDDRRNNELVSNDSGNGTPRGFNYFSEKELRTPTINKIMHSESPAKLPNQIPRNTSADRKKREPMSDKRERVLAGTKGSSGDKVLSKQTNDARITPSYTKRNPSTPVNKKATREILKAVKSQRIVYDSPGQWQKNKALHNYNSPGLMRDRDIVDKSELETSYSSSGSKKEDKSEFQHPAWIDETTSEISDDQEDHCDNNKEEDCQKPDKPINVTETRVIGYLNPIERQSLSPSERKKEDIARWLMSTAFDQRSDTSLSVIGPSQPNSPGSGNSSLERLEQHYQTPNNRTKFQTKVNSTTSGKTKTNDNTPITGGQLKQLESVQKTNVNTPSTGGDVKRLESVWKKNDGGNSKPTTFKANTPSTGGNLKCLEPSVWKKNDGGNSKPTTFKANTPSTGGNLKRLEPVDKKNINTPSTGGNSKILNKPVQKTMDNFMKKTKPRSRTPKNLTPLSITKTATNTNTPSLRIEDCEDLLTRLYGDSWRKNADALLPKEPRTAPLTDKVKKKVRDSTRRRSDKIVKSIKPGISRTEKKTRNIRDSFINDWPSSEDDAVETSFVTALSTPIPPSHTIRRKETPMSEVQKKVIELCDTDSDDDKTPVVKNTRKRLSFGDDKSSGSFTSEYDPGEVILPKPVSRIKNLPTSKSSPKVFKQPAVTVSFIKSLSKEVPLEKVHPEAKKYRLNYKLTKDELCQRLFKIFNEKVFDCQLPKDMSIEWNARMRRTAGFCYNKMIRSAIGKPERSSRIVLSTKILDEPNRLRDTLIHEMCHAATWLINEISDGHGLYWRSWASKALKVFPELPPITRCHDYKITTKYTYRCVDCGYSIGRHSKSLDISRKRCGHCFGKFELLVNRTTRSGKVELKTPNAKQPSGFALFVKENYDSRRAVTTGPNGVHVGTLFKKKDHVVVSPSGLLQCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -