Ccon006131.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:9799519-9801916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.8e-06 0.001 20.0 1.4 1 23 84 106 84 106 0.98 2 13 9.4e-07 0.00011 23.1 2.6 1 23 112 134 112 134 0.98 3 13 7e-06 0.00084 20.3 1.0 1 23 140 162 140 162 0.98 4 13 0.00029 0.035 15.2 0.6 1 23 168 190 168 190 0.96 5 13 0.00034 0.041 15.0 5.2 1 23 196 218 196 218 0.98 6 13 2.8e-05 0.0033 18.5 1.6 1 23 224 246 224 246 0.98 7 13 0.00049 0.058 14.6 0.8 1 23 250 272 250 272 0.98 8 13 3.5e-06 0.00041 21.3 0.5 1 23 278 300 278 300 0.97 9 13 0.00046 0.055 14.6 3.6 1 23 306 328 306 328 0.96 10 13 3.2e-05 0.0038 18.3 0.4 1 23 334 356 334 356 0.98 11 13 2e-05 0.0023 18.9 3.2 1 23 362 384 362 384 0.98 12 13 7e-05 0.0083 17.2 2.5 1 23 390 412 390 412 0.95 13 13 0.0045 0.53 11.5 5.4 1 23 418 440 418 440 0.98
Sequence Information
- Coding Sequence
- ATGAATTTACAAGATTTTTCATTCGACCACGTAACTGTCAAAATAGAAAAAGAGGATCAACAGGATTGGAAAAGTGAGTACCCAAATAATATTTACGATCAAGATTTTGCTCAAGAACTTCCAATCGACATTGAGGACGTTAAAATTGAAGAAGAACCTGAGAACAAACCTCCTTTTGAAGACAACAATAAAATTAATAAACCTATTCCAACTTCGCCAAATTCAAACAAACTTACACCAAAAAAACCTCACTCTTGCGAAATATGTTCCGCGAGGTTCCGTTCGCGCGCGAACATGCTCGTGCACATGCGCACCCACACAGGGGAGAAACCCTACTCTTGCAAAGTCTGCAAATCTAGATTTTCTCAAAAAAGCTACTTAAAAATCCACATGCGCATCCATACCTTAGAAAAACCATTCACCTGCGACATCTGTTCCACGAACTTCAGCCGCAAGGACGTAATGACTAAGCACATAAGGATCCACACCGGAGAGAAGCCATACGCTTGTAAAGTATGTCCCGCGCGGTTCCGCGGGAAAAATCATTTAGACCGACACACAGCGATCCATACCGGAGAAAAGCGCTTTGAATGCGACATTTGCAAGATGAAATTCACGCGAAAGTGCCACCTACCGAGACACATGGTAACTCACATGCAAGAGAAGCCATTTTCTTGTTCCAAGTGTTCCTTGAAGTTCCGCTTGGAGGTTAGCTTGCAAAAACACATGAGAGTTCACGACAGAACCTTTAGTTGCAATATTTGTTCCGCGAACTTTAAGAACAGGAACGTTCTTAAGATTCACTCCAGAATCCACACGGGGGAGCGACCGTTCGCTTGTTCCGTGTGTTCCAAGGCGTTCCGCACGGCCTCTGGCCTGAGTAACCACAAGCGCAGCCACACCAATGAAAGACCTTACGAGTGTCTTGTCTGTTCCTTCAAGTTCCAAACAAAGTCGCACTTAAATCGACACTCTTCGATACATACCGGCGAAAAACCGTTCCAGTGTAAAGTTTGCGAGGTTACGTTCCGGAACATTGCGTTCTTAAACACTCACATGTTAATTCATGAGGGAATTAAACCGTTTTCTTGTGAAACTTGTGGGTCTAAGTTCCGCCACAGTAGTAATTTTAAGGAACACTTGATGATTCATACGGAAGAAAAGCCTCATGTTTGTGAGAATTGTTTGAAAGCGTTTAGAACGAAGAAACAATTGAATCTTCATATGTTTGAACATGAAGGGAAGAAACCTTACAAGTGTAGTTTTTGTTCTAAGCAGTATACTAGTAGGACTCATTTTGGTAATCATCTTAAGGGACATACTAATGAAAAATAA
- Protein Sequence
- MNLQDFSFDHVTVKIEKEDQQDWKSEYPNNIYDQDFAQELPIDIEDVKIEEEPENKPPFEDNNKINKPIPTSPNSNKLTPKKPHSCEICSARFRSRANMLVHMRTHTGEKPYSCKVCKSRFSQKSYLKIHMRIHTLEKPFTCDICSTNFSRKDVMTKHIRIHTGEKPYACKVCPARFRGKNHLDRHTAIHTGEKRFECDICKMKFTRKCHLPRHMVTHMQEKPFSCSKCSLKFRLEVSLQKHMRVHDRTFSCNICSANFKNRNVLKIHSRIHTGERPFACSVCSKAFRTASGLSNHKRSHTNERPYECLVCSFKFQTKSHLNRHSSIHTGEKPFQCKVCEVTFRNIAFLNTHMLIHEGIKPFSCETCGSKFRHSSNFKEHLMIHTEEKPHVCENCLKAFRTKKQLNLHMFEHEGKKPYKCSFCSKQYTSRTHFGNHLKGHTNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381304;
- 90% Identity
- iTF_00381304;
- 80% Identity
- -