Ccon024672.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:16876418-16879723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0023 0.28 12.4 2.9 1 23 12 34 12 34 0.98 2 12 0.00032 0.038 15.1 0.8 1 23 71 94 71 94 0.97 3 12 7.6e-06 0.0009 20.2 0.4 2 23 101 122 100 122 0.97 4 12 1.9e-05 0.0023 19.0 3.3 2 23 129 150 128 150 0.96 5 12 1e-06 0.00012 23.0 0.3 1 23 156 178 156 178 0.97 6 12 0.3 36 5.8 1.5 1 23 212 234 212 234 0.97 7 12 5.2e-07 6.2e-05 23.9 1.5 1 23 527 549 527 549 0.97 8 12 8.6e-05 0.01 16.9 0.3 1 23 556 579 556 579 0.94 9 12 1.9e-05 0.0023 19.0 0.1 1 23 587 610 587 610 0.97 10 12 2.2e-07 2.6e-05 25.1 3.3 1 23 616 638 616 638 0.99 11 12 1.3e-05 0.0015 19.5 5.1 1 23 644 666 644 666 0.98 12 12 1.1e-06 0.00014 22.8 2.2 1 23 672 694 672 695 0.96
Sequence Information
- Coding Sequence
- ATGTCAACAATGCAAAACAATGAAATATGTAATTTCACTTGCACAGAATGTGATAATTTTTATAGAAGTGAACATGAGTATTTAAATCACATGCAATTGCACTGGGGAGAAGTTTGGAAATGTTTGCAGTGTGATGACAAATGCACGTTGTTTAAATCGCAAGTTGGATTAAAAGAACACGAGGGTTTGTATCATGGTTCAGATAAACCATTCAGATGTTCCAAATGTAAGCTAGTGTTCGATAGAGTTTCGCAGTTGGACTACCATGTGCGGAGCATTCACTTGGGTGAAAAATCTCAAGTATGCCAGCTGTGTGGAAAAGGATTTTTTCGCAAAGCTGACTTGAAGACACATCTCAATGTTCATCTTGGTACCAATCAATGCATTTGCGAGTTTTGTGGACGTCAATTTAATCATATTTCTAATTTGATTCGTCATCTAAGAATTCATGAAGGAACTAAACCATACCCATGTTCTGTCTGCGGTAAGAGATTTACTCAAGTCAGTTCATTGGCAAGACATAAATTAATTCACGAACGAAATAATGAAACTACAAATGATGAACAAGGACAAATAAGTTTTCAGACTGTAACAAAAAATAAAACAGCTAAACTTAAGCCTGTAAAACGTCAACATTACTGTCAAACATGTGGCGACAGTTTTCAGCTGATGGTGCTTTTAAAAGAACATGAAAAAACTCATAAACCATTACCAGAACCACAGAAGGCTTATCAGGTGTCGCAGAATGAAGATAAAACAAGAAATGCATGTTTTAATGCTGACAATTTTTTGGAGCGTATTCATCCAGTCCGTGATGAAAGTATTGACATTTCTGATATCCTAAGTCCTTATTGTGATGAATTGGAATTACCAACGACAGATCTTATGCAGCGCGAAGACGTCGGAACTGAAATGGCTAAAAAATTTACAAATTTAGAAATTTCAAACAGAGAAATACGTAATAATAGTGTTAATAATCCAAACTGTGTTCATATAGAGAAAAATCAGTTTTTAATAGAAGTTTGCGAGTCTGACTATTTAAATAATTTAGGACTTAATTCATTGGAGCTGCATGATAATGTGATATTACCTGATAATCATTTTAATAATATAAATTACTGTGTTGATAAATCATACACGCTGCCGATAGCAGTTGTCGATAAAGATTTAAATGAGCAGTGGGATTTGCAGTCGACAGTTAATTCAGTACTTGAACAATTAAAAGATACCAGCATTAATTTGTTAGAAAATTTGCAACTACAACCGATAGATCAAAATCCCGAGGGTTATCGCGGGTCCGATGACCTGGTCGTAGATTTTAACAACGAGGAAGTTCAGACTCAAACACCGTTGGTACGGTTGGTACAAAATGAGGAAGGAGAACAGTTTTTTGAACTAGTCCGTGATACAGTTCACTTTGAAAGTCATGATAATAATTTACAAAATCAAAATCAAAATATTTTCTCGGGAGTCACTAGTCAAGCGATGGCTTCCGTGACTGCTGATAGCGTTCGTAAAAAACGGTGTAAGCCAAAATCGCAAGGTAAGTTGCGGATAAAAGATTTGGTAAAACCGAAGTACCGATGCACTGTTTGCAATAAATCTTTTTCTTCGACTTCAAACTTGAAACAGCATGCAGGAACTCACTCTGTTGATCAAAAAAAATTCCAGTGTAAACAGTGTGGAATTTCTTTTGCTTGGAAGTCGACGCTTAATAAACATATTGCTGGTAATCATCGGCCTGATGGACCTTTGAAGTTTGTTTGCGAGATTTGTCCAAAGGTTTACAGTACTTTGTCTCAAGTTAATGAACACGTCAAGAGAGATCATTTGAAGGAACGTAACTTCAAATGTTCAGAGTGTGGGAAATCGTTTTTTAAGAAATTTGATTTGAAGTCTCACATAAGAACGCACACTAATGAACGACCGTATGCTTGTAAAATTTGTGGAAAAAGCTTTCATCACCAAAGCCATATTATTCGACACGAGCGAGTGCATTCTGGTGAAAGACCTTACACGTGCGATATCTGCAAACAAAGTTTTAGTCAACCTGGATCACTTAAAGTTCATAGGCAAAGGCATCATTTGACAAAAGTTGATATTCTTGATTATCAAATTAATGAAGATGATCCTCTAGCTCTGAGTGCTGCTTAA
- Protein Sequence
- MSTMQNNEICNFTCTECDNFYRSEHEYLNHMQLHWGEVWKCLQCDDKCTLFKSQVGLKEHEGLYHGSDKPFRCSKCKLVFDRVSQLDYHVRSIHLGEKSQVCQLCGKGFFRKADLKTHLNVHLGTNQCICEFCGRQFNHISNLIRHLRIHEGTKPYPCSVCGKRFTQVSSLARHKLIHERNNETTNDEQGQISFQTVTKNKTAKLKPVKRQHYCQTCGDSFQLMVLLKEHEKTHKPLPEPQKAYQVSQNEDKTRNACFNADNFLERIHPVRDESIDISDILSPYCDELELPTTDLMQREDVGTEMAKKFTNLEISNREIRNNSVNNPNCVHIEKNQFLIEVCESDYLNNLGLNSLELHDNVILPDNHFNNINYCVDKSYTLPIAVVDKDLNEQWDLQSTVNSVLEQLKDTSINLLENLQLQPIDQNPEGYRGSDDLVVDFNNEEVQTQTPLVRLVQNEEGEQFFELVRDTVHFESHDNNLQNQNQNIFSGVTSQAMASVTADSVRKKRCKPKSQGKLRIKDLVKPKYRCTVCNKSFSSTSNLKQHAGTHSVDQKKFQCKQCGISFAWKSTLNKHIAGNHRPDGPLKFVCEICPKVYSTLSQVNEHVKRDHLKERNFKCSECGKSFFKKFDLKSHIRTHTNERPYACKICGKSFHHQSHIIRHERVHSGERPYTCDICKQSFSQPGSLKVHRQRHHLTKVDILDYQINEDDPLALSAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00378221;
- 90% Identity
- iTF_00378221;
- 80% Identity
- -