Ccon015554.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:6759676-6764547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0038 0.45 11.7 2.6 1 23 366 388 366 388 0.97 2 18 0.014 1.6 10.0 0.7 2 23 424 445 423 445 0.97 3 18 8.4e-05 0.01 17.0 0.8 2 23 512 533 511 533 0.98 4 18 0.0013 0.16 13.2 1.2 2 23 578 599 577 599 0.97 5 18 3.8e-05 0.0045 18.0 0.5 1 23 604 626 604 626 0.96 6 18 0.0028 0.33 12.2 0.3 1 21 632 652 632 656 0.92 7 18 0.00019 0.023 15.8 1.0 2 23 739 760 738 760 0.95 8 18 0.00022 0.027 15.6 4.8 1 23 814 836 814 836 0.97 9 18 0.0003 0.036 15.2 0.7 1 20 841 860 841 862 0.94 10 18 0.051 6.1 8.2 0.6 2 23 873 894 873 894 0.97 11 18 3.1e-05 0.0037 18.3 0.6 2 23 932 953 931 953 0.97 12 18 2.8e-05 0.0033 18.5 1.6 1 23 958 980 958 980 0.95 13 18 0.0034 0.4 11.9 4.1 1 23 986 1008 986 1008 0.97 14 18 8.5e-06 0.001 20.1 0.4 1 23 1025 1047 1025 1047 0.95 15 18 1.6e-06 0.00019 22.4 0.3 1 23 1053 1075 1053 1075 0.99 16 18 8.8e-05 0.01 16.9 0.4 1 23 1081 1103 1081 1103 0.98 17 18 0.00082 0.098 13.8 4.2 1 23 1109 1131 1109 1131 0.96 18 18 0.011 1.4 10.2 0.4 1 20 1137 1156 1137 1158 0.89
Sequence Information
- Coding Sequence
- ATGGACGGCGTTAATATTGATGATAGCAATCAAGTGTCTCACAACGAGGATGATAATGTCGAAACAAGTGTGGAAATTTGCCGGGTTTGTCTCCTCAGCAATCACTTGATGAGAGATTTATTCATTGAGAATGATGTTGTATCATTATCAACTAAAGCCATGAGCTTCGCTAACGTTAAGATACATCCAGATGATGGTCTACCAACTCACGTATGCTGTGATTGTGCAGAAAAATTAGAATCAGCATATGAATTTAAATTACAAGTTGAACAAGCGGACAGCTTGCTTCGAGAAAAATATGACAGCTTGAATATAAAGGAAGAGTTATTTTTTAATGAAGTTGAGGTACGTTTAGAGAATGAAAGACATGATGATGTCACAGGTATGGTTGACGAGCATTATGATGTTACAAACACCGTATCTGATGATAAATCGTCATTATTAAAAGATCATTTGGCATTATTACAAGTCGAAAAACTCACCCATCAGCACGAGCAATATTTAGAGGATGAAGTTATGAAAGATCAAATAATGCAATCCGACGAGCAATATATCGAAGACGAACATACTGATGAGCAAATGATCACCGAAGCTATTGAATCATCGGCGAATGACAATATCAAGTCTACAGCAATAATGCACGACCAAGATACCATTACTGTTGGGGAGCATAATTATATAGTTCAACATCCGGATTACACATTATCTAGTGATCAAGATCATGATTTAATAAATGCCGACAATGTTAATGAACACGACGCGAATGAATATTTATCAATGATTGGCGATGAAGAGAGATTACTCAAAGAAACTGAAACCCATTTAGAGAATGTTATTGATGACAATAAAAATAATGGATATATTAACGACAACGAACACGTTGATGATGATGATATTGACGATAATAATGAGTTGAATCAAATTGATGATGGAATTGAAATGCAAGAAAATGAGTGCAATAAAATTTCAACGTGTACTGATGAAATTGATTCTTCAGACCAAGTATTAGATGACGAAAATTATTTTGAAAATCTTGATCTGAGCAGTAGGTTATCACAAACTTCGTCAATTAATAAACTTGACAAAAAAATTTTTTTTATGTGTCACATTTGTGACGAAGAATTTTTGTCCAAGGACTTATTAAAGGAGCATTTACATTCACATGAAGAAGTTAAACAGAGATTGTCGATGAAAAAAACACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCCAAATAAATGTCCATATTGCGGTAAAGAATATTTGTACGTTATTTCATTTAAAAAACATATTAAGCAGCATCAGAAAAATGATGATGAGTTAAAAGAAGAAAATAATGACTCAATATACCAGGATGATAACTCTGCAGATTCTAATAATTTTGATAATAACGACACTTTCGAAGTTATTGCTGACGATAAACAAAATATGGAAGAGTACAATGATAATGAAAATTATAATGAACTTTCAAATCATCATGACTATCAAATTGATAAACAAAAGTGTAACATTTGTGGATTGGAATTTGATTCACTTGATAAATTAAAAAATCATCGTTCGACTCATGTTATTGAAGGTGTTATATCAGAACAGGATTTGAAAGATGAACTTTCCAGTATGTGTCAAAAAGAGTATGATCAAGAGAGAATACTGGATAATAATATATTGATGGAATCGAAAAAAGAAGGTAATGAACTTAAGTGCCCTACTTGCTTTTTATTATTCAGCAGTAAAAAATTATTATCAAAACATTTGGAGACACATGAGGGCATCAGGTATCGTTGTAAAATATGTGGTGACGAATTTACTCAGAAAGACGATCTTCGTAAGCACGCTGAGCAGCATTTAGAAGTAAAAACATTTCAATGTGTACAGTGTAACAAGATATTTGTTAATGAATTGACGCTAAGAAATCATTTAATAGCAACTAATCACAAGACAACAGTCCACGGTGAAGAGTATGATCCAAATAAGAGAATTAAAAGAGTAGCAGCGCGCGCGGCACAAAAAATAATTGATAAAATTAGTACTGAGGATAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGAAGACTGAACTTACTTTAGGTCTCAAGGCCGCCGATAAATTGCAGTCTAAAAAACAGAGTAGTAAAAATAAAAATCTTGAATGTGAAACGTGCGGCAAGAGATGTATTTCTAAACAAGCTTTGGCTAAACACATGGATTATCATATGAGAACTTTGAAAACTGATTCCACAGAATTAAAAAATAAAAAAAGCAATGAAGTTAAAGATATTACGCGGAGCGTTCCTGGATTCTCTGATAATATTGATGATGACGATGATGATGATACCGATTTCGATGGCGGATTAGACTGGCCAATGGACAATCATGAATGCTCAACCTGTAAAAAACGGTATAGTACGAAAAAATCATTATTAAGACACCAACTTTTGCACGAAGAACCCAATTTTGAGTGTGATATTTGTAATGTTAAATTTTACCGTAAAGATAAGTTGAAAGCTCATTATGATAAATGTTCTGAAAAAAATCCAAATCAAGTGAGAAAGTGTAATATTTGTGGTGATACTTTTGAGAATAATGAAATACTGCGTGAACATAGATCAAAACATGTTGACGAGGGAATATTAACCGAGGAAGACTTGAAAGATTTGGAGCCAGGTTCTGAAGATAGGAAGGGTGAAAAAATAGCCCGAAAAAGACGTACTGATATTGTTGGTCTAGAGTGTACTGAATGCAATAAACAGTATACCTCACGTAAAGGTCTTTTGAGACACATACAAGTTCACGAAGGTAAAAAATATCTTTGTGATATATGTCCAAAGAAATTTTATCGTCGTGAGCATTTAAAGATTCACGTTGCTAAACATAATATGATAAAACCACACAAGTGTACACGTTGCTCGAAACGTTTTATGAAAGAGGAGCAGCTTAATGCACATTTGACTAAACACGAGAGAACTTTTAAGAAAAATAAAGAGCCAGATAGTACATCAAAAAGATTCCTTTGTGAAATTTGTTCGAAAAGTTTTACTCAGTCGACAACTTTGGTCGCTCATTTGCGTGCTCACAATGGTATTAAACCTTATGTGTGTGAAGTCTGTGCAAGACCGTTTACTACTAATGCGTATTTAAAAATGCACATGAGAACCCATACTCAAGAACGGCCGTACACGTGTCAATTTTGTTCGCGTGCTTTTGCAAGAGCTGACACGCTGGCTAATCATCTGACTTCTCATACTGGCGAGGCTAAATATCATTGCAAATTTTGTCCGAAAAATTTCCGTCGACTCAAATCTCTAAAAGAACATGTGTTTATTCATACAGGACAACGGCCGTATGCATGCCCGACATGCGACCGGAGATTTAACAACAATGGAAGTCGATATGCTCACAGTAAAAGATGTAAACAAAATATGCTGCAAAATCAAGCTAGACAAAGTCAAGCGCAGACTTCACAGTCACCTCCAGGTCCACCACCGGTCCAAATAGCACCAGCACCACTACCGCCACCACCGACACCACAAGCTGCTACTATTAGGCTAGCGCATCCAGTTACTCAGACAATGCAAGTTGTACAATCGAAAAACGTTAAAACAATAACTATTGCAAGACCTGACCAAGTTGGTACTCATCAAATTTTGCAACACCAAGAAATACTAATGCCACTTATTTTACCTCTTACTGTTACACTTACTGATTGCGACGAAGAAGTTATATTACCAGAGGGCACCAAGATATTTACTACTACGTAG
- Protein Sequence
- MDGVNIDDSNQVSHNEDDNVETSVEICRVCLLSNHLMRDLFIENDVVSLSTKAMSFANVKIHPDDGLPTHVCCDCAEKLESAYEFKLQVEQADSLLREKYDSLNIKEELFFNEVEVRLENERHDDVTGMVDEHYDVTNTVSDDKSSLLKDHLALLQVEKLTHQHEQYLEDEVMKDQIMQSDEQYIEDEHTDEQMITEAIESSANDNIKSTAIMHDQDTITVGEHNYIVQHPDYTLSSDQDHDLINADNVNEHDANEYLSMIGDEERLLKETETHLENVIDDNKNNGYINDNEHVDDDDIDDNNELNQIDDGIEMQENECNKISTCTDEIDSSDQVLDDENYFENLDLSSRLSQTSSINKLDKKIFFMCHICDEEFLSKDLLKEHLHSHEEVKQRLSMKKTPXXXXXXXXXXXXXXXXXXXKPNKCPYCGKEYLYVISFKKHIKQHQKNDDELKEENNDSIYQDDNSADSNNFDNNDTFEVIADDKQNMEEYNDNENYNELSNHHDYQIDKQKCNICGLEFDSLDKLKNHRSTHVIEGVISEQDLKDELSSMCQKEYDQERILDNNILMESKKEGNELKCPTCFLLFSSKKLLSKHLETHEGIRYRCKICGDEFTQKDDLRKHAEQHLEVKTFQCVQCNKIFVNELTLRNHLIATNHKTTVHGEEYDPNKRIKRVAARAAQKIIDKISTEDNLXXXXXXXXXXXXXXXXXXXVKTELTLGLKAADKLQSKKQSSKNKNLECETCGKRCISKQALAKHMDYHMRTLKTDSTELKNKKSNEVKDITRSVPGFSDNIDDDDDDDTDFDGGLDWPMDNHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPNQVRKCNICGDTFENNEILREHRSKHVDEGILTEEDLKDLEPGSEDRKGEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPHKCTRCSKRFMKEEQLNAHLTKHERTFKKNKEPDSTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYTCQFCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQARQSQAQTSQSPPGPPPVQIAPAPLPPPPTPQAATIRLAHPVTQTMQVVQSKNVKTITIARPDQVGTHQILQHQEILMPLILPLTVTLTDCDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382050;
- 90% Identity
- iTF_00382050;
- 80% Identity
- -