Basic Information

Gene Symbol
snpc-4
Assembly
None
Location
contig:5911453-5914916[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 1.1 1.7e+03 -0.1 0.1 23 43 230 252 223 255 0.74
2 6 2.4e-08 3.7e-05 24.4 0.3 3 38 263 300 261 301 0.95
3 6 3.8e-06 0.0059 17.4 0.2 3 45 317 363 315 364 0.95
4 6 4.6e-09 7.2e-06 26.7 0.0 1 38 370 408 370 415 0.92
5 6 6.5e-08 0.0001 23.0 0.1 3 42 425 463 424 464 0.88
6 6 9.4 1.5e+04 -3.1 0.0 21 34 678 691 670 692 0.76

Sequence Information

Coding Sequence
ATGTCTGACAACGAGGATACTCTCGAGGAGATCAAGGCTATGCAAGAGATTTTGTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTGATCGTAAGCCTTCAGTTTCAAACAATCCATCTTCCACGCTTGATTCTGATGATGAATCTCCGAACGATGATGCTCATAAGCTAGCCGTTGAATCATTAAAATCCGTTGAAAATCTTATGCTGCTTTGCAGGCAAGCTGAACAAGCTATTCAAGCCAAAATCGAAGAAAATGCAAAGAAGCGTCAGGAAGTTGATTACCAAATTCATTTGTTGGCAAAAGGAGGCAGAGCTAACTGGAGAGTGCCATATAATAAAGCTGGAATGCCATATTTCAAGGATGAAAAACAGTTTCCAGCTCCGAAAAACGAAGATACCAAGATGAAAGAGAAAAATAACGAACTTTTAATATCACATTTACGGAGGCCGATCAGGTGGACCTACAAAGATCGTAATTATTTGAGAATTGCGATACGTAAGCAAGCAGCTAGTGACACATTTGATAAAATGATTCGAGATAGCAGCAAAAATGATACAACTAGTTCGGAATTACAGCCTCCTAAGGATCTGCGTACGATGGTAGGACCTTTGGGCGCGCGTGAATTTGACTGGATGAAAATATCAACGATTGATATGAAGTGTCGTCACACTCCTAATGAATGTCGTGTTATGTGGAACATATTGCTTCATCCAGATATTAATGACAGCCAGTGGAAAAATGATGAAGAAGAACAACTTAAAGCCAAAGCTCGTGAACACAAGCTACAGGATTGGGATACCATTGCAAAAGAATTAAATACTGGTAGAACAGGATATGTTTGTTTCATAGCATTTCACAGGACATTAGAGAACACGGTCTATAATGATCGGGCTTGGTCATTACATGAAAACAAAATATTAACAGAATCCGTAGAAAGATTACGATTTGGTGATTTCATACCTTGGGGACGTGTAAGTACGTATATTAATGATAGGACGAAAACCCAAATTTATGCACGTTGGAAGTACAATTTGGATCCATCGTTAAAAAAAGGAAGGTTTACTGCTGAGGAAGATGATTTATTATTAGATAGTGTTGCCAAGTATGGACAAAATTTTCCTAGAATATCTGCAGACATAATGCCTTATAGGTCTAGTGTTCAATTGAGTGGGAGATTTAAATTATTGATGCTAAAAACAAACAGTTCTTATAATTCATGGTCTTTACTAGAAGATCGCCAATTAATCCAACTTTATGAAGAATTTGGATCACAGTGGAGTATGATTGCCAGTATTATGAAAAAAGATCGTACTTATATACGTCATCGGTATACTATTATAACACGTCATATGTCTAAAGGTGTTCGATTGGCAAATATACCCCGAAAACGTCCAATTGATGAGGTTGATTGTGAGGATGATGATGATGAAGTAGATGAACCAGATAGTAGAAATGATAACATGGGTACTAATTCTAGCATCGACGCACAATTAATGAGATATTTTCAAGGTATACAAGCAACGGAAAGTAAGCCTGGACGTAAAGCTGTATATCACACTCCGGATCAACTAGAACTTCGCACTAAAAAGTTGGACCAAATATTTGAAATGCTTAACGTCAAAATGGAGATTCCAGATAATTTAGATGTTTATGATTTAAGTGAGAAAAATAAACAATTGTTATCTTCTTATAAAGAGTATATTTATCTCAAGTCATCAGTAAAACCACAAGTTATTGAGGAGTACAGACAGAAAATGTTTGGTGATTTTGATTTAAATGATGATAGTGAGCCTTTCATTCCACCTGCACCCTTTGGTTTGTTTCAGAATGGAGCGAAAAGAATTAATCAACGTAAAAAAGCTAAATTTGATGGCCGTTTAGATGCTGAACCTGTTCAAAATTTACAAATTGTATTGGATATGGATATGGAAACGCCTTCCAATGTGTTAGAAAAGTTAAATGATGAGGAAAAAGAACAATTTGATAAAATATCCGAATTGGTGGCCTCTAAGTGTACACGCTTACAATTTGCTGGTAGATTTGAACAAGCGTATGTCCCATCGGTGGAATCAGTGAGTAAACCTGCTAAAAAATTAAATCCTTCTGATAAATTGAAATTTAAACCGGTGCCAGATTATGAACCGGAAAGTTGGAGGCATGCTTCTTTGAAAAAAGATCTATTTATTCCGCCGAATTATTCAACTTTACTTGGTTATCAAGCGTTATTGAATTTCAGAGAATCACAGTCAATAATGAGAAATAGAACTGATGACTTAGCAACTCCGGATTTAGTGAAGCTTACCGCCGAGGGTAAACAAGCGTTTCATTTATTTAAAACTCGTTTTCGACGATTGTTCAAATATCCTATCCTTATGTCACGAATAATTCCCAAGGATAAGAAACTGCCGGATCGGACTGTTCTTAAAGAGGGTGAAGGTATACAGATGGATAAAAAAAAAATTAAAATAATGAATGAAGAGGATAATGAAAATGATCCAAGTAGTGAATTAACTGAGGATTATGAACAAAGTAGTGAATTTGATAATGAGCCTGATAGTCTACAAGACCCATTATCACAGCAAGAAATTAAATGTGAAATTAAATATGATATTAATGAAAATGGGCAAGAGCAAACAAAACGATTCGTTTTGTCAGTAAAATTAGACCAGGTTAAGTAG
Protein Sequence
MSDNEDTLEEIKAMQEILSQXXXXXXXXXXXXXXXXXXXXXXXXXRFDRKPSVSNNPSSTLDSDDESPNDDAHKLAVESLKSVENLMLLCRQAEQAIQAKIEENAKKRQEVDYQIHLLAKGGRANWRVPYNKAGMPYFKDEKQFPAPKNEDTKMKEKNNELLISHLRRPIRWTYKDRNYLRIAIRKQAASDTFDKMIRDSSKNDTTSSELQPPKDLRTMVGPLGAREFDWMKISTIDMKCRHTPNECRVMWNILLHPDINDSQWKNDEEEQLKAKAREHKLQDWDTIAKELNTGRTGYVCFIAFHRTLENTVYNDRAWSLHENKILTESVERLRFGDFIPWGRVSTYINDRTKTQIYARWKYNLDPSLKKGRFTAEEDDLLLDSVAKYGQNFPRISADIMPYRSSVQLSGRFKLLMLKTNSSYNSWSLLEDRQLIQLYEEFGSQWSMIASIMKKDRTYIRHRYTIITRHMSKGVRLANIPRKRPIDEVDCEDDDDEVDEPDSRNDNMGTNSSIDAQLMRYFQGIQATESKPGRKAVYHTPDQLELRTKKLDQIFEMLNVKMEIPDNLDVYDLSEKNKQLLSSYKEYIYLKSSVKPQVIEEYRQKMFGDFDLNDDSEPFIPPAPFGLFQNGAKRINQRKKAKFDGRLDAEPVQNLQIVLDMDMETPSNVLEKLNDEEKEQFDKISELVASKCTRLQFAGRFEQAYVPSVESVSKPAKKLNPSDKLKFKPVPDYEPESWRHASLKKDLFIPPNYSTLLGYQALLNFRESQSIMRNRTDDLATPDLVKLTAEGKQAFHLFKTRFRRLFKYPILMSRIIPKDKKLPDRTVLKEGEGIQMDKKKIKIMNEEDNENDPSSELTEDYEQSSEFDNEPDSLQDPLSQQEIKCEIKYDINENGQEQTKRFVLSVKLDQVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00380223;
80% Identity
-