Ccon013544.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- lola
- Assembly
- None
- Location
- contig:19124082-19127386[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5 5.2e+03 -2.1 0.1 5 21 103 119 101 131 0.54 2 2 1.5e-08 1.6e-05 25.2 0.1 9 40 407 439 404 444 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTCTGCCTTAGGTGGAACAATCACCAAACGACGTTAATTCAAAATTTTGATACATTGCTGGAAAGCGGTACCTTGGTCGACTGCACCTTGGCAGCGGAGGGGAAATACCTTAAAGCCCACAAAGTTGTCCTCTCCGCGTGTAGTCCATACTTTGAGGGTCTTCTTAGTGAGCACTATGACAAACATCCTGTTTTCATCCTTAAAGATGTCAAGTTTAAAGAATTAAAAGCCATGATGGACTACATGTACAGAGGAGAGGTGAACATCTCTCAGGACCAATTGGCAGCTCTTTTAAAAGCCGCCGAGTCGTTACAAATCAAAGGGCTCTCGGAAAGTAAAACCGGCAGCAGTGGTAGTACAAGTAGCAGTAAGGCAGAAACAAGATCACAAAAGACTGCACCCTCAGCCCCCTCGTTGGACATTCCTCACTCGTCTTCCGGCCTCACAATTGAGAAAAATAATAAAGTTCCTCGTCAAAGTCTCGCCCAGACCTCTGTTGGCGATTTACCCGAAGATTCCGCAAGTCCCTCTTTATCAAAAGGCATTTCCTCCAGGGAAGGCTCAGTAAGTCCAAACGGACGAAAACGTAAAAGATACAGGCGAAGAAGTCTAAATGATGACAACCCAATTGACAACCACGAAACCTCAAACTCGAGCGACATGTCTCATCAACCCTTGAACGTGCCTGCTCTTGGTGTTGCCCCGGTAGCCGATGAAAAATCAATGTCTGACCCATCTGACGCTCTTGGCAGATCCGCACTTATGCAACAACTGACTAAACCCGCTGACGATATGCTAACGATGCCTGTTGAAAAACCTGAGCCTAATGACACACTGATTGAGCCAAAGTCTGAGTACCTGGATGAAGCCGAGGACAGTGTTGAAGACTTGACACTTGATGACGAAGGAATGGATGACACTATGGATGATGGAAACAGAGCTGGACCCTCTCACGACCCCTCCCACCCTGGTAGGGGGGGAGCGCGGTCTTGTACGAGCGGTAATTTGGTCGCTGGTGGTGAGACGGACACCACCAGCTGGGCATCTCATTTCCTCGATTGTAAAAAGGTATCGATTGTCAGCAATTGTTATATTAATCAGCGACGAGAATCGCGTCCGGATGTTGACGTGTCCGCGTTGCTCAAGTCACTCGCCAACAAACAGGGTAGAAAATATAGTTTAGACTGCGTTAAAAAATCCCTGGAAGCGATATTACAGCAAGGTGTCAGTACTACTCATGCGTCTGAAATGTACGGGATTAATCGATCTACTCTGCAATTTTATTTGAAAAAATTAAATGTCGTAAGACGACGTTGGAGACAACCCGCCTCTGCTCTAGTCATTCAGCATCAATAA
- Protein Sequence
- MEDDQQFCLRWNNHQTTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGSSGSTSSSKAETRSQKTAPSAPSLDIPHSSSGLTIEKNNKVPRQSLAQTSVGDLPEDSASPSLSKGISSREGSVSPNGRKRKRYRRRSLNDDNPIDNHETSNSSDMSHQPLNVPALGVAPVADEKSMSDPSDALGRSALMQQLTKPADDMLTMPVEKPEPNDTLIEPKSEYLDEAEDSVEDLTLDDEGMDDTMDDGNRAGPSHDPSHPGRGGARSCTSGNLVAGGETDTTSWASHFLDCKKVSIVSNCYINQRRESRPDVDVSALLKSLANKQGRKYSLDCVKKSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPASALVIQHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01006285;
- 90% Identity
- iTF_00378918;
- 80% Identity
- iTF_00378918;