Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.9e-12 7.2e-09 35.9 0.0 1 41 32 71 32 73 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.9e-12	7.2e-09	35.9	0.0	1	41	32	71	32	73	0.92

Coding Sequence: ATGGCCATTGACAAGAAGAAAAAGTCAAAAAATAAAAAAAAGCCATCACGAAAACAAAATAAATGTGATAAACCTGTTAACAAAAAACAGTATGATCATGAGCAGCTACTAAAAGCATTAAATGATATAAGAAATGGTATGGCCGTAAGAAAAGCTAGCCGTGAATATAATATTCCGCGTGGAATTTTACAAGATCGTTTGCATGGAAGAGTTCCTGAAGATGTTAGGAGAAAAGGTCCAAGTCCAGTATTAACGAAACTTGAAGAAGAAACTGTCGCAAACTGGTGCAGAAATTTGGTAAAGTGTGGATTTCCGTTAAAAAAAGAAGACTTGCTGAATACAATTGCTCAAATCATTAAAGGTGATAATCGAGAAACACCATTTAAAGATGGTCGTCCCGGAGTGAAATGGTATAATTCTTTTATGAAAAGAAATAATTTAACAGCAAGATGTCCCGAGTCGATCAGCAAAGGCAGGGCAGTTATTACTAAAGAATTAATAAGAGGTTGGTTTAGCGGATTGCAGAAGTATCTCGAAGAAGAAGGAGTTGCAGATATTCTTGAGGATCCTACACGAATTTTAAATGGTGATGAAACAAGCCTACAGCTTTGTCCAAAAACGGGTAAAGTCATTGCACCAGTAGGATACAAAAATATGTATCAAGTTTCAACGGGTCCAGAAAAAGAAGCAATCACTGTTTTGCTTTTTTTTACTGCAAGTGGAGAAACACTTCCACCTTGTGTTGTGTTTCCTTATATACGTCCTCCGCGAGATCTGATTCAAAGTATGCCTGATGAATGGATACTGGGAAAGTCAGAAACTGGGTGGATGAAAACAGATGTGTTTTACGATTATTTTACCAAATCATTGAACCCATGGTTGAGAAAAACATTAAAAGACCAGTTCTTGTTCTAG
Protein Sequence: MAIDKKKKSKNKKKPSRKQNKCDKPVNKKQYDHEQLLKALNDIRNGMAVRKASREYNIPRGILQDRLHGRVPEDVRRKGPSPVLTKLEEETVANWCRNLVKCGFPLKKEDLLNTIAQIIKGDNRETPFKDGRPGVKWYNSFMKRNNLTARCPESISKGRAVITKELIRGWFSGLQKYLEEEGVADILEDPTRILNGDETSLQLCPKTGKVIAPVGYKNMYQVSTGPEKEAITVLLFFTASGETLPPCVVFPYIRPPRDLIQSMPDEWILGKSETGWMKTDVFYDYFTKSLNPWLRKTLKDQFLF

Sequence clustering based on sequence similarity using MMseqs2