Ccon028825.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:12909276-12910820[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-14 9.2e-11 42.0 0.0 1 40 22 62 22 63 0.96 2 2 2.5 2.6e+03 -1.1 0.0 2 15 98 111 98 112 0.83
Sequence Information
- Coding Sequence
- ATGACACCAAAAGCTCCAGCTAAAAAAAAGAAGTCGGTTCAAAACCGCCAGAGATGTCAATATACTCCTGAGGATTTAGAAAATGCTGTGAATAGTATAAGAAATTCAGAATTAAGTATGAACAAAGCTAGTCAGATGTATAATATACCAAAGGCTACTTTATCTATTAAAGTAAAACAAAATCATGCTGTTCAGTGTAAGCTAGGTCGCTCAACGATTTTGACAACGGACGAAGAGGATAAAATAAAAAATTGGATCTTAAATAAAGCTAAATTGGGTTTCCCTATGTGTCGTGAGGATATTAAGAATGCTGTTCAAAAAGTTTTAAAGGAAACGAAACGTGATAACCCTGTTATTGATGATCGTCCTGGACGCAAATGGATGGAATTATTTTTAAATAGGCATCCCGAAATAAGTTTAAGAAACAGTGAAGTTTTATCAAAAGCTAGGGCTTGTGTGACAGAAGAAGGAATTAGAGAATGGTTCACTGGTTTACAAAATCATATTGAAATTGATCAAAAAATTAATTTTTCTTTTAATTACTGA
- Protein Sequence
- MTPKAPAKKKKSVQNRQRCQYTPEDLENAVNSIRNSELSMNKASQMYNIPKATLSIKVKQNHAVQCKLGRSTILTTDEEDKIKNWILNKAKLGFPMCREDIKNAVQKVLKETKRDNPVIDDRPGRKWMELFLNRHPEISLRNSEVLSKARACVTEEGIREWFTGLQNHIEIDQKINFSFNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -