Cchi007243.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- Prdm15
- Assembly
- None
- Location
- scaffold19:678708-682486[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1.2e+02 3.1 0.1 3 23 231 251 229 251 0.94 2 14 0.00054 0.042 14.0 0.2 3 23 260 281 258 281 0.90 3 14 2.2e-05 0.0017 18.3 3.7 1 23 409 431 409 431 0.97 4 14 0.016 1.3 9.3 2.7 1 21 435 455 435 456 0.94 5 14 0.00016 0.013 15.6 2.5 1 23 468 490 468 490 0.97 6 14 0.044 3.5 8.0 4.9 1 20 494 513 494 515 0.94 7 14 3.5e-05 0.0027 17.7 0.7 3 23 521 542 520 542 0.97 8 14 0.00018 0.014 15.5 0.2 3 23 561 581 560 581 0.97 9 14 0.0037 0.29 11.3 2.2 1 23 586 608 586 608 0.97 10 14 4e-05 0.0031 17.6 0.2 2 23 614 635 613 635 0.95 11 14 0.00017 0.013 15.5 6.4 1 23 640 663 640 663 0.97 12 14 0.0011 0.087 13.0 0.8 2 23 670 691 669 691 0.94 13 14 2.8e-05 0.0021 18.0 1.5 1 23 698 721 698 721 0.98 14 14 0.045 3.5 8.0 8.2 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACAACTTGCTTAATTGCAACGTTGGTAATAATACTAAAATAGAATTTTCAGGATGTAATATCTGTGGTGACCTTCACAAAACTCATGAGTGTTATTTTTTAACCAACTTTCAATATATCCGCGACTCCAAAACAACTACCCGAGCTCGTCAGACCCTGCCAAAGGACTTGGAGATCATCCGGATGGCCGATGGCACAACAAGTGTCATAGCAAAGTGCAATTACCAGCGAGGAATGACCTTCGGACCATTCGAAGCTAAGCGAAACTGGGCAATGAACCCCGCGATCAACTTCACAATAAAAATCTTCGGAGAGTCTACCAAGGACACTTATTACCTAGACTACTCCGACGAAGATACCAGCAACTGGATGTGTTTCGTCCCACCGGCTACCAACGCCAAGGAGCAGAATTTAATTTGCTACCAGTCTAACCAAGAAATTTATTACACTGTCTCGAGAGAAATCCCGGCTGGAGAAGAGCTGAGAGTCTGGTACGCGCCCTACTACGCCCAGAAGATGAAGATCCCCTTGCACGTCAACAACAGAGCTCTCCCTCCTCTCCATCCGATAACACCTGATGAAAAAGATTCCGTAGAGATTTTAGACGTAGCTCTGGCTCAAGAATTAGCAGACAGACTTTCTCCGACGAAGCTCGGCGCAAAAGATAAAAAAAAAATTTGGATTTGCCGAATTTGCGCGATGACTCTTAACTCAGTGGTTGCTTACGCCAAGCATCAGATGAATCACTACAAGCCTCTTGTAAGAACTATTTGTACTATTTGTAATAAAAAATTTCCAAATTTGGCTACTTTAGATAGGCACAGAGCTGATTTGCACAGTCCAGGAAGAAATGAAGAAAATATTGTCGGAATTCCAACAACTGCTAACCAGCAGCAACAAAATGCCGCGACTATTTTGAATATGAGCGAGCAATTTATGACAGAAAAAGAAAATCATGATTTGTCTTTACTGGACAGTTCGATCAACACCAATGATTTGCTTCATCACGCTGGAAGTCTTATAGAAAATTCATCCCTCAAGTCTATTCTCGAAAACCAGTGCTTAAATATGAACGTAAGTTCCATGGCTGATTCTATTTTATCCGAGCACATTTCAAGCGCGGATTCTGTCAAGTTCAACGTTGAAGAATTATCCTCAGAGCTGCTAGACATAACTCCGGAAGACGAGGAAAAAATTTCTGAAAATTCAACTGAGAATTTTGACTGCGATATTTGTGGAAAAAAATTCCAACGTGTGCATTATCTGTACCGTCATTTGCGCAAGCACACTGGAGAATTTATCTGCTCGACTTGTCTCTGTGTATTTGCAAGGAAAGAAAATTTAGTGTCACATCGTTGTTCAGCCACCAAGAGCCCGGGAAAAGACTCTACTCTCTACCAGTGCTCATATTGTTCGAAAAATTTTGCAAAAGAAAAATATTTCAAAAATCACATTGCTCAGCACTGTGAGGTCTACCGATGCAGAAGATGTCGGCATAGATTCTCAACCAAGTCCGAGTTGGACTCACACAAGTGTGGGTCACCCAAGCAAGCTTGTGGCCAGTGTGGGAAGAATTTTTTCACTGCGCTTTATTTAAAGCGGCATATCAGGAGACAACACGAGGCGCCGAAAGCTCAGAAGAAAAAAAAGCCTGGGGAAGAAAAATCGGCGATCTGCGAAATTTGTGGAGATATTTTTAAAAATCTTGGGAGTCTTCAACAGCATCAAAAGTCCCATGGCGAGAAAGCTTACGAGTGTGAAATTTGTAATCGTCGTTTTCACAGAATTGGTGTTTTGAAGGAACACAAATTTACGCATCAGAGCGCCGAGCTGCCTTGTAATGTCTGTGGTAAGAAATTCAAGAGCAAGAGAGCTCTTGATGTTCATGTTTTGTTGCATGGCAACAAAAAGTACCAGTGCGAAAAATGTGACAAGAGCTTTTTTCAAAAGTGCAATTATTTGAAGCACTACAAACAAATTCACGCTGAAAAAGTCTTGCAAAGTTGTCCTCACTGCTCCTTAACGTTCATGACTGAAAGCGCTTTTAATAAACACGTCGCTGGTCATGATAAAAATATTGAAGGATATCCTTGTGACGTTTGCAAAAAGTTTTTTCCCTCTCAAGCTAAAGTTGCCAGGCACATGCAAACTTGCCACAGTGGAATTATTTATAGGTGTCCGTTTTGCAAGTCCACTGTCAGGCACAGGCATAGTTTGAGAAGGCATTTTAAAAAACAGCACAGAGATCTTACTGATGAATGGAGTAAGCCGGGATTTTACAAACAACTTGAAGAAAAGTCTACTGTTGGAAATAGTGATAAGAGTCCTGGTGAACCAGGTACTCCTGATAAAGTTTTGATAGAACAGCAAGTACCTGAAGATGTTACGGAGCATCTTGAAGATACTGATGAAGTTACTGGATCCATTGCAGAACCTGTAACAACAGAATTTTCGGAGAGCTTGAATACAGTTCAAGGAATTCAAGGGACTGAGAATATTCAAGATTTGATGCAAAATGTTAAAAGTGTTGACTTGGAAGTTAACAGTCAGTTACTTAATGATGTTCCTCAACTTAGAATTGACTCAGATTCACAATTAGCTGAAACCGTCTTGAATAATACTTACATTTTTGGCGAAGATGGCGATTTTGTATTTTATGTTTTAGATAATGATACTGAGCTAGGATTGTGA
- Protein Sequence
- MEDNLLNCNVGNNTKIEFSGCNICGDLHKTHECYFLTNFQYIRDSKTTTRARQTLPKDLEIIRMADGTTSVIAKCNYQRGMTFGPFEAKRNWAMNPAINFTIKIFGESTKDTYYLDYSDEDTSNWMCFVPPATNAKEQNLICYQSNQEIYYTVSREIPAGEELRVWYAPYYAQKMKIPLHVNNRALPPLHPITPDEKDSVEILDVALAQELADRLSPTKLGAKDKKKIWICRICAMTLNSVVAYAKHQMNHYKPLVRTICTICNKKFPNLATLDRHRADLHSPGRNEENIVGIPTTANQQQQNAATILNMSEQFMTEKENHDLSLLDSSINTNDLLHHAGSLIENSSLKSILENQCLNMNVSSMADSILSEHISSADSVKFNVEELSSELLDITPEDEEKISENSTENFDCDICGKKFQRVHYLYRHLRKHTGEFICSTCLCVFARKENLVSHRCSATKSPGKDSTLYQCSYCSKNFAKEKYFKNHIAQHCEVYRCRRCRHRFSTKSELDSHKCGSPKQACGQCGKNFFTALYLKRHIRRQHEAPKAQKKKKPGEEKSAICEICGDIFKNLGSLQQHQKSHGEKAYECEICNRRFHRIGVLKEHKFTHQSAELPCNVCGKKFKSKRALDVHVLLHGNKKYQCEKCDKSFFQKCNYLKHYKQIHAEKVLQSCPHCSLTFMTESAFNKHVAGHDKNIEGYPCDVCKKFFPSQAKVARHMQTCHSGIIYRCPFCKSTVRHRHSLRRHFKKQHRDLTDEWSKPGFYKQLEEKSTVGNSDKSPGEPGTPDKVLIEQQVPEDVTEHLEDTDEVTGSIAEPVTTEFSESLNTVQGIQGTENIQDLMQNVKSVDLEVNSQLLNDVPQLRIDSDSQLAETVLNNTYIFGEDGDFVFYVLDNDTELGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380576;
- 90% Identity
- iTF_00382083;
- 80% Identity
- -