Basic Information

Insect: Cotesia chilonis
Gene Symbol: ush
Assembly: None
Location: scaffold9:2180497-2196804[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0056 0.43 10.8 0.0 2 20 245 263 244 265 0.92

2 20 5.4e-05 0.0042 17.1 1.3 1 23 295 317 295 317 0.98

3 20 0.28 22 5.5 1.6 3 20 365 382 364 384 0.93

4 20 0.018 1.4 9.2 4.4 2 21 599 618 598 619 0.94

5 20 0.085 6.6 7.1 0.0 3 20 646 663 644 665 0.91

6 20 0.021 1.6 9.0 0.0 2 23 703 724 702 724 0.95

7 20 0.011 0.88 9.8 1.4 1 23 730 752 730 752 0.99

8 20 0.12 9.3 6.6 0.5 3 21 826 844 825 845 0.92

9 20 0.5 39 4.7 7.8 1 23 901 923 901 923 0.98

10 20 0.00064 0.05 13.7 6.1 1 23 1085 1107 1085 1107 0.99

11 20 3.5e-07 2.7e-05 24.0 0.4 1 23 1113 1135 1113 1135 0.98

12 20 0.022 1.7 8.9 1.3 1 23 1160 1183 1160 1183 0.96

13 20 0.046 3.6 7.9 0.4 1 23 1189 1213 1189 1213 0.96

14 20 1.5e-05 0.0011 18.9 0.5 1 23 1218 1240 1218 1240 0.98

15 20 0.009 0.7 10.1 4.0 1 23 1252 1276 1252 1276 0.91

16 20 0.00046 0.036 14.2 2.0 1 23 1278 1300 1278 1300 0.98

17 20 1.2e-05 0.00091 19.2 0.2 1 23 1306 1328 1306 1328 0.96

18 20 3.7e-05 0.0029 17.7 0.2 1 23 1334 1356 1334 1356 0.97

19 20 0.018 1.4 9.2 0.3 5 23 1371 1389 1362 1389 0.79

20 20 0.0076 0.59 10.4 2.6 1 23 1395 1418 1395 1418 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0056	0.43	10.8	0.0	2	20	245	263	244	265	0.92
2	20	5.4e-05	0.0042	17.1	1.3	1	23	295	317	295	317	0.98
3	20	0.28	22	5.5	1.6	3	20	365	382	364	384	0.93
4	20	0.018	1.4	9.2	4.4	2	21	599	618	598	619	0.94
5	20	0.085	6.6	7.1	0.0	3	20	646	663	644	665	0.91
6	20	0.021	1.6	9.0	0.0	2	23	703	724	702	724	0.95
7	20	0.011	0.88	9.8	1.4	1	23	730	752	730	752	0.99
8	20	0.12	9.3	6.6	0.5	3	21	826	844	825	845	0.92
9	20	0.5	39	4.7	7.8	1	23	901	923	901	923	0.98
10	20	0.00064	0.05	13.7	6.1	1	23	1085	1107	1085	1107	0.99
11	20	3.5e-07	2.7e-05	24.0	0.4	1	23	1113	1135	1113	1135	0.98
12	20	0.022	1.7	8.9	1.3	1	23	1160	1183	1160	1183	0.96
13	20	0.046	3.6	7.9	0.4	1	23	1189	1213	1189	1213	0.96
14	20	1.5e-05	0.0011	18.9	0.5	1	23	1218	1240	1218	1240	0.98
15	20	0.009	0.7	10.1	4.0	1	23	1252	1276	1252	1276	0.91
16	20	0.00046	0.036	14.2	2.0	1	23	1278	1300	1278	1300	0.98
17	20	1.2e-05	0.00091	19.2	0.2	1	23	1306	1328	1306	1328	0.96
18	20	3.7e-05	0.0029	17.7	0.2	1	23	1334	1356	1334	1356	0.97
19	20	0.018	1.4	9.2	0.3	5	23	1371	1389	1362	1389	0.79
20	20	0.0076	0.59	10.4	2.6	1	23	1395	1418	1395	1418	0.95

Sequence Information

Coding Sequence: ATGGTGGTCTCATTCAAAGTCGCTGAATATAATCTATCGTGGCAGCTTAAAATCAATCGGGAAGATGAGGAGTGGAGTGACTCAGAGAAGACCCCGTCGGTGAGCAGCGGGGTGGATGGTGGAGGATCAACAGTATCCAGCCCAACACCGCCGCACCCCGACGAAGAATCGAGTCTCCCGCCTCCCCCAAGACTGAACCAAGCCTCAGGAATTTTGAGTAACTCGTCAATCGAAGACTTCCGCTTACGCCTGAACATCCTCTCCGATGACGCGCGAAAGCGGTTGAGCAGCCTCGCGGACGATTACGAGCTATCAAAAGCCCTGCGACAAGGATCGAAGAGCCTAGAAAGGAGTCCCGCGAGGGCCGACAACGATGACGGAACGTCTTCGCCAAAAGAGACTGAATCCAGCAGATCGACTGGTTCGCTGTGCAAGCGCCGGGATTCCGACGAGTCCCGGCGCTCGGACGCCAGCTCCGAGCACCCAAAGAAGATGCGCCTGGATGAAGATGCACCTAGACTCCGGTTGAACGCCAGTTTGGCGACAGATCCAGCGCTGAGACCCGCCACTGTTGCCGCTCTGACCCTAAAACCCGACGGCCTGTCTCCACCGAACTCGGGGTCTTCGCTGCCAGTGGGGCTGCAGAACGCCCTGGCCTCTGGGAGGCTCTTCGTGATACCTACTGACGGCAAGGACCCGATCACCGTCGACCCGAGCCGGCCCATTCCGCTCTACTGTCCGCCGTGCGGGATCAGGTTTTCATCCGCCAGCACTTTGGAGGCTCACCGGACGTTCTACTGCGCCCACAGACCGAGAGCCGAGGAGGACAACGCTAACGACGACGATGAAGACAAGCCCAGTAAATACGAAGTTCGGAAAGCGTACGCGTGTCCTCACTGCTCCTACAGCGCCGACAAAAAAGTTTCGCTGAACCGACACATGCGGATGCACGCAGCTTCGCCGGCAACTCCAGCTCCCGTTCCTGTTCCTCCGGTTCCTGCTGTTCCGCCAGCGTCTACCACTCCAGTTCCGATCTCCAGCAGCAACAATACTCCAACGAACGGGCTGGTAAACGAAGAAACCGAGCGGTACTGTAGGAACTGCGACATCAGGTTCAACTCCTTGAAGACTTACCGCGCTCACAAGACTCATTACTGCAGCACCCGGCACGTGGTCAAGGACCCGCCCACTCCAGTTCCTGCAAAAGCGTCCCCTCCAACGAGTTCCAGTCCTGGAGACTCTCCACCGCCGCAACCGTGTCTCGCTCTGCCGACAAACCCGATCCTGATCGTTCCCTGCTCGTTGTTCCGCGGGGCGAGTGTTCTGGCCGCCCCTTCGCTTCCAGCTCCAGACACCGCGTGCTTCCTCTTACCGAACGGATCGCTCCAACCGATGACCAGAGGTCTGGCGCCGGCTGGAAACTCTATAGACCCCTCGCAAGTTCTCAGGGTGGCTAACAAGCCGGTGACTCCGTCTGTGGTCGCCGTTCCGTCAAGGCCTAACTCTCCGTCTTCTGCGGCCTCGACTCCCCTGGATCTCAGCATCAGAAGGTCTCCGGTGCTGCATCCGGACGAAAAGGAAAATCGCGTTTCTCCAGCTCCTTCCTCATTGCCGCCATCTAGCAGTCCAAGGTCAAGAGGAAGCGCTAGTCCGCGCACGAGGTCCCTGCCGACGGTCCAAACGGCCGGTTCTGGAACGGCAACACCAACTGTTCCGCCAACGGAACTAGCGCTGAGACTTGCGGAACTACCTCCGCCTCCAGTTCCTGGAGTTCTCGTCAAGCAGGGTGTTTCCAGATGTAAAGAGTGCAATATTGTATTCTGTCGGCATGAAAATTTTGTCGCTCATAAAAAACACTATTGCCAAGCGAGGGAAAATAATGTCTGCAGCCCTCCGCCTTCAGACACACCCTCACCTCCGCTGGTGCAGCTGATCTGTGCGGCTTGCGGGATCAAGTTCGCTTCCATGGATAATCTCGTGGCTCATCAAGCTTTCTATTGTCCAAAAAAACCAGAGTCTCAGGAGCATCATACGCGTTGCCCTAAATGCAAGGTGATGATTGAAACTGGTGCAACGCACACTTGCTCGATACAAGCCGGTGGGTGGAGATGTCCAGTTTGCGGTGCAGTTAGTCCAACTGCTGGTGCTGCTCAACGTCACATGGATGCTCATCAAGGTGTCAAAGCTTTTCGTTGTACTATTTGTCGGTACAAGGGTAATACACTTAGGGGAATGAGAACGCATATTAGAATGCATTTTGAAAAACGTGGAACTGATTTACAGGAAGAAAATTACATAACATGTGTGTTGGATGACGACACAACGTCAGTGCCAACACCTGAGCCAGCAACGGCAACAACTCCCGAAGAAATTCCCGCCGAAATTCAAGTCAACGGAAAAACTGAAACAAGGAAAAATACACCACCACCTGAAGAAACAGTCGATCCAGCTAAAACAAACACCAACTCGCGATACTGCCGCTCTTGCGATATAAGTTTCAACTACTTGAGCACCTTTATCGCCCATAAGAAGTTTTACTGCTCAAGTCACGCCGGTGAAGCAAGCGTCTCTCTGGACAGTTCTACTGTACAATCATTGCTCGAATCACAAAATCTCATGCCAGATATCGAACAACCAGCTGGTGAATTAAAAATATTAATTGATATTAATAAAGGAATGGATCAAGATGAAGAGGACATTTTTCAATGTGGTAAATGTAAATGTCAATTCACGTCGTTGCACATGTTTTTGTTACACAAAAAATCGCATATAAAAAAACAAGAACAGACTGTTGATATAAGTCAGTATTTAATAAGTGATAATAGTCAAGTACAAGTACACAATGAGGATCCATGTCAAGATCCTACTACTCAGTACAATCCGACAGAAACATTTATCCAAACTAATCAACTCACCGAGCCGATAATACTTGAAGAATCTGACATGTTGTTCAGTATGGATCAAGAAAACTCGAGCTATCTCACAGCAGATGCTGAGTTTGGAGTACCAATTATTCTCAATACTGAAAATCTTGAAAACTTCACAGCGCCGTCATTGATATCCGATGATAATTTGCTGAAAGATGATAGTAACGATGTACACCAGTCACGAACAAGTGACACAGCGTGTCAGGATGATGTTGGTTATGATGTTTCTCCTAATGAAATTGTGACAATTGATAATAATATTATGGATGATATTGTAGATGGTTTAGAAAGTCAAGATAATACCAATCCACCATTAAATTTAAAGTACAAGTGCAATTACTGCCACAAACAATTTGCTAAAAAGTTTTATTGGCAGCAACATGAACGTTCTCATACAGGAGAGAAGCCTTATCAGTGTGTTGTTTGCGGACGTGCGTTTGCACAAAAGTCGAATGTTAAAAAACACATGTCATCGCACAAAGTATGGCCCGGTACAGCCATACATTCGCTACCTCCAGAGGCACCACCTGATGGAAGTATTGATCGTACTTATCATTGCCAATTTTGCAAAGAAATATTTGAATCGTACAAAGCACTAAAAGGTCACTTGATAGTATCACATATGACATTGAAAGTATACAAATGCGTACAGAGCAGTTGTAGTATGATGTTTGCTGACTTAGATGATTTTCTCGAGCACACAAGAAGTCATAAACGCTCAGAATATCGTTGTCATGTATGTGGTGAAGTATTTAATACGCTTTCAGATCTTGGTCTTCATCAGTATGTCCACTCCGTCCAAAAACAGAAGACAACTGAAAAATATTACTGCTGTACTGTTTGTAAATCATCATTTTCAAATCTTGAAGCGCTTCAACATCATACTGAGACTACGACACACGATTATGCATGTCCCCATTGTGGCAAAAGTTTTCTTATTGAACGATTTTTGCGGCGACATCTCAAAACTCATGTATCTTCAGCTAAATTTGCCTGTGAAGATTGTGGTAAAGCTTTCAAAACGGAGCAATATCTTGCCAATCATAAACTTATTCACAGTGAAGAAACTCCATTTATTTGCCCTCAATGTCCAGCAAGATTTAAACGCAAAGATCGGTTGGGACGTCATATGCTGATTCATGATCTTAGTAAAAGATTGAAATGCCCGTTCCGCGGATATCTCGGTTGCATGAGTGAATTTTCACGGCCTGATAAACTCAAAAGGCATCTTCTTACACACAGTAATATCAAACGATTTACTTGTACTCAATGCAATCGTGATTTTAATCGTGCTCAAGCAATAAAACATCATGAAATGAGTAAACATATATTCAAATGTGACGTTTGCTCAGAGTTACCTCGAAAAGCCTCCGGCACTTTTAAACCAAGAAAACCGACACCAAAGCGACAAATGGTAACTAAATCTACAACTGCTGGACTTACGGTTACGGATAAGGAGAAAATAAAAACTGATGAAGTTGATAAACGAACGGTATATTTATAA
Protein Sequence: MVVSFKVAEYNLSWQLKINREDEEWSDSEKTPSVSSGVDGGGSTVSSPTPPHPDEESSLPPPPRLNQASGILSNSSIEDFRLRLNILSDDARKRLSSLADDYELSKALRQGSKSLERSPARADNDDGTSSPKETESSRSTGSLCKRRDSDESRRSDASSEHPKKMRLDEDAPRLRLNASLATDPALRPATVAALTLKPDGLSPPNSGSSLPVGLQNALASGRLFVIPTDGKDPITVDPSRPIPLYCPPCGIRFSSASTLEAHRTFYCAHRPRAEEDNANDDDEDKPSKYEVRKAYACPHCSYSADKKVSLNRHMRMHAASPATPAPVPVPPVPAVPPASTTPVPISSSNNTPTNGLVNEETERYCRNCDIRFNSLKTYRAHKTHYCSTRHVVKDPPTPVPAKASPPTSSSPGDSPPPQPCLALPTNPILIVPCSLFRGASVLAAPSLPAPDTACFLLPNGSLQPMTRGLAPAGNSIDPSQVLRVANKPVTPSVVAVPSRPNSPSSAASTPLDLSIRRSPVLHPDEKENRVSPAPSSLPPSSSPRSRGSASPRTRSLPTVQTAGSGTATPTVPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARENNVCSPPPSDTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKKPESQEHHTRCPKCKVMIETGATHTCSIQAGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDDTTSVPTPEPATATTPEEIPAEIQVNGKTETRKNTPPPEETVDPAKTNTNSRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASVSLDSSTVQSLLESQNLMPDIEQPAGELKILIDINKGMDQDEEDIFQCGKCKCQFTSLHMFLLHKKSHIKKQEQTVDISQYLISDNSQVQVHNEDPCQDPTTQYNPTETFIQTNQLTEPIILEESDMLFSMDQENSSYLTADAEFGVPIILNTENLENFTAPSLISDDNLLKDDSNDVHQSRTSDTACQDDVGYDVSPNEIVTIDNNIMDDIVDGLESQDNTNPPLNLKYKCNYCHKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKEIFESYKALKGHLIVSHMTLKVYKCVQSSCSMMFADLDDFLEHTRSHKRSEYRCHVCGEVFNTLSDLGLHQYVHSVQKQKTTEKYYCCTVCKSSFSNLEALQHHTETTTHDYACPHCGKSFLIERFLRRHLKTHVSSAKFACEDCGKAFKTEQYLANHKLIHSEETPFICPQCPARFKRKDRLGRHMLIHDLSKRLKCPFRGYLGCMSEFSRPDKLKRHLLTHSNIKRFTCTQCNRDFNRAQAIKHHEMSKHIFKCDVCSELPRKASGTFKPRKPTPKRQMVTKSTTAGLTVTDKEKIKTDEVDKRTVYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -