Cchi006007.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia chilonis
Gene Symbol
-
Assembly
None
Location
scaffold14:1023824-1031350[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00022 0.017 15.2 0.3 2 23 516 537 515 537 0.96
2 11 0.011 0.85 9.9 3.2 2 23 604 625 603 625 0.94
3 11 6.7e-05 0.0052 16.8 4.4 1 23 745 767 745 767 0.97
4 11 2.8e-06 0.00022 21.2 0.8 1 23 773 795 773 795 0.98
5 11 0.0053 0.41 10.9 0.8 1 16 801 816 801 816 0.94
6 11 7.4e-06 0.00057 19.8 1.1 1 23 815 837 815 837 0.96
7 11 2.9e-09 2.3e-07 30.6 0.9 1 23 843 865 843 865 0.98
8 11 4.2e-06 0.00033 20.6 3.4 1 23 871 893 871 893 0.98
9 11 1.3e-06 9.9e-05 22.3 2.2 1 23 899 921 899 921 0.96
10 11 3.3e-06 0.00026 20.9 3.9 1 23 927 949 927 949 0.98
11 11 8e-06 0.00062 19.7 3.0 1 23 955 977 955 977 0.99

Sequence Information

Coding Sequence
ATGCTTATTTTGTTTATTTTTATGTTTATTTTTACTACCAACAGTCTGGAGGACGAGTGTTATTACGACGGTGACGATTTTTGTGTTAGTCAGGAAGACATCCTGTCAGCAGATCTTCTCCCGGGAACTTTTTTACTGTCAAGTTTAAACGGAAATAAAAATGTTAAAAGTGGAGTTCAAGAAACAATCAATGGGACATATGAAGCGGCGTTCAACCAGATGAATTATCACAGGAAAAGGATGAATGAATATTTGTGTCACGGTTTTATGGCTGAAGGGATATTCCAAGACATGAGATCGATACGCGTTAAACGACGTCAAGATTCAACCTCTTCAAATTCAATGCCTGATTTTTTAGGCGATGACAATGTGACGGTACATGACAAGATGTTATCTGACGAGGGTAGCAGTAAATACAAAGAATGGCTTCAAAGAACTACCACTCTGAATGACGTCTACCGCCATTATGCTCCGAAAAATAAAATATCCAAGAAATTCGGACAAAATTACGTCCACGGAATCGAAGAATTTGACGGTGAAGTAACGGGCTACGCAATGCCTGCGCCAGTTTTTCCTGATAAGATTGGTCCACACTACGATTCTTCTGATTATGATGACGTTATCTCTTCTCCAACTGGGCATTATTACAGTCACAATGGCCCTCCGCAGCATCATTCTTCCTCAAATCACCCTCCTCCACCACCGCATCATTCTCACCATGAGGATGTTGTCCCGGTGATTCACGAAGAACATCATTATCACGCTGCCAGCCACTTTGATGAAGAAGAATACTGGCCTAAAGCTCCGCACCACAAATCCAAGGGAGATTTATCAATAAAAGATTTTTTCGAAATAGCGCTGACTGCCTTGGCATTTTTGGCCTTTGGATTATTCATCATCCAACTTCTGATGGCAATTACAAATTCCGGAACCACAACAGTTGTAACTGAAGATCCAATAAGGTTTCGACGAAACGCTTCACCGTATCACAGCAATGCAGAATTGAACGAGCTTTCTCATAGAGTTCTTCAGTCTATTGAAGCAATTATGGTTGCTAACAGTGACTCGGGTCGTTGTCTTCGGTGGACTCTATGCAGAGATAACAGACACTCTGTACAAACAGCAAGTCAAATTTTGAAACAAAAAACATGGATTGCAATGTTTGACTCGATTAAAGCGTCAATTCTTGGACTGGGTGGATCTGACTGTTCTGCACTTTATCCGGAGTGTGATTTGCTCGATGGAAAAAAAATGATTTGTCTGTTTGTTGGTCCAGCTGAGACGTCACTCGCTGCGAAATTACGATCTTTGTCTTGTTTAGAGGTGTGGCAGGGAGATGGATTGCCGGAAAAATTATGCGACCGCTGTGTGACAAGAGCAGAGTCAGCTCTTTTATTTCGAGAGCAGTGTCGAGCGGCTGACAGAGCATTGCGACAAGCAGCAGCACGGGTTTCAGGACTCGCAAATTATACTACTGTATCAGGTTGCAAGTTGTATCAGCAGAATCACGGATTAACTCCAATTGAAAGCTCTCAGAAAACACTAAAATGCAGCGACTGTGGTGCTGTGTTTATGAACTATCAGGAATTACAAACTCACAGTCGCTTGCACAATCCTTTTGGTCAAGAGGCGGGTTCTCTTTCGCACATGCATATCGTCGAAGCACAAAATCCGTACTTTAATTCAGATACTTCAATTTCTTCGTCGGTAATTGACAATAATCATGAATCAATTGTAAATTTAAGTAGACCCAGCCCATTGCCAGCAGCAGAATTATCAAGAAAAAATAACAGACCAGCATGCGCTCTTCATTGCTCTCTCTGTAACCACACATTTCCTGACAGAAATCAGCTGATCAGTCACAATTTATCTCACTGTGCTAATAACGAAGACACTTCTTGCGACAGCATAGAAATTGGAGATGATTCTAATCCGATTGCGGAAAATTTGAGTTTCCAAGCGATTGATCTTGCTTATCCGCGACATAATCCATCAATTGACTTCAACTATTCCGAAAATTTAAACCTTGCGTCAGCTGATCCAACAACTAACAATTTAGTCAGTACAAATTTGGAGATACAAAATTCTTCCTCTAATTTATCAGATCACATAATTCCCTTCCCGAGATTTTCTGATCAACTTAACGATCAAGCTCTGAACAATGAGGAAAATTTAGCAAGTAATGGGAATTTACCTGTACAAATAAATTCTGAACACGAGGTTGATAAAAAACACAAATGCTTGACATGCAATAAAACTTTTGCGCAAAAGTCGAAATTAAAAACTCACGAATTGTCCCATACTGGCGAGAAACCATTTCGATGTGTCAATTGTGACAAAGCTTACACTTCAAAGAGTAAATTAAACGCTCATGTGAGATTACACACGGGATCTAACGTTCATCGGTGTGATGTTTGTCAAAAAACTTTTTCTTATCCTTCTTATTTGTGTTCAATTTGTGGTAAAAAATTTCGTATAAAAAAAAATTTACGGCTGCATTTGAAACTACACAGTGGAAAAGATTTATTTAACTGTGAAATTTGTGATAAAGTATTTAGTCAAAAATATAATCTTAAAGTTCATATGAGAATTCACAAGCGAATAAAAATCCACAAGTGCGAGTATTGCAGCAAGTCTTTCAGTGAAAAGGGTAATTACAAAGAACACTTGAGAATACACACAAAAGTTAAGCCATTTGTGTGTAAATTATGCAATAAAGCTTTTTCACAATCTAGTCACTTAAAAAATCATGAAGCTTCTCATGACAATCAACGACCTTATCAGTGTCGATTGTGCGGTAAACGGTTTAAACTGTCATCACATTTGAAAAGACACGTTAATTTACATACTTCAGTTAAAAACTTCAAATGTATGCAGTGTGATCAAATGTTTACTCAGGCCTTCAGTCTTAAAAGACATTTAAAAAAGCATAATGATGTTACTTAA
Protein Sequence
MLILFIFMFIFTTNSLEDECYYDGDDFCVSQEDILSADLLPGTFLLSSLNGNKNVKSGVQETINGTYEAAFNQMNYHRKRMNEYLCHGFMAEGIFQDMRSIRVKRRQDSTSSNSMPDFLGDDNVTVHDKMLSDEGSSKYKEWLQRTTTLNDVYRHYAPKNKISKKFGQNYVHGIEEFDGEVTGYAMPAPVFPDKIGPHYDSSDYDDVISSPTGHYYSHNGPPQHHSSSNHPPPPPHHSHHEDVVPVIHEEHHYHAASHFDEEEYWPKAPHHKSKGDLSIKDFFEIALTALAFLAFGLFIIQLLMAITNSGTTTVVTEDPIRFRRNASPYHSNAELNELSHRVLQSIEAIMVANSDSGRCLRWTLCRDNRHSVQTASQILKQKTWIAMFDSIKASILGLGGSDCSALYPECDLLDGKKMICLFVGPAETSLAAKLRSLSCLEVWQGDGLPEKLCDRCVTRAESALLFREQCRAADRALRQAAARVSGLANYTTVSGCKLYQQNHGLTPIESSQKTLKCSDCGAVFMNYQELQTHSRLHNPFGQEAGSLSHMHIVEAQNPYFNSDTSISSSVIDNNHESIVNLSRPSPLPAAELSRKNNRPACALHCSLCNHTFPDRNQLISHNLSHCANNEDTSCDSIEIGDDSNPIAENLSFQAIDLAYPRHNPSIDFNYSENLNLASADPTTNNLVSTNLEIQNSSSNLSDHIIPFPRFSDQLNDQALNNEENLASNGNLPVQINSEHEVDKKHKCLTCNKTFAQKSKLKTHELSHTGEKPFRCVNCDKAYTSKSKLNAHVRLHTGSNVHRCDVCQKTFSYPSYLCSICGKKFRIKKNLRLHLKLHSGKDLFNCEICDKVFSQKYNLKVHMRIHKRIKIHKCEYCSKSFSEKGNYKEHLRIHTKVKPFVCKLCNKAFSQSSHLKNHEASHDNQRPYQCRLCGKRFKLSSHLKRHVNLHTSVKNFKCMQCDQMFTQAFSLKRHLKKHNDVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-