Basic Information

Insect: Cotesia chilonis
Gene Symbol: -
Assembly: None
Location: scaffold24:1009288-1012189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.64 50 4.3 0.8 1 19 180 198 180 202 0.92

2 16 0.0062 0.49 10.6 3.3 2 23 213 235 213 235 0.94

3 16 3.5e-05 0.0027 17.7 0.1 1 23 242 264 242 264 0.98

4 16 2e-06 0.00015 21.6 3.4 1 23 270 292 270 292 0.96

5 16 0.41 32 4.9 0.1 1 13 301 313 301 314 0.88

6 16 3.6 2.8e+02 1.9 0.7 11 23 319 331 316 331 0.88

7 16 5.9e-07 4.6e-05 23.3 2.2 1 23 337 359 337 359 0.98

8 16 1.3e-07 1e-05 25.3 0.9 1 23 364 386 364 386 0.98

9 16 0.00019 0.014 15.4 1.3 1 23 393 415 393 415 0.98

10 16 1.5e-06 0.00012 22.0 0.6 1 23 434 456 434 456 0.99

11 16 5.4e-07 4.2e-05 23.4 0.5 2 23 464 486 463 486 0.96

12 16 0.0018 0.14 12.3 0.6 1 23 492 514 492 514 0.97

13 16 0.00033 0.025 14.7 3.1 1 23 520 542 520 542 0.98

14 16 7.8e-07 6.1e-05 22.9 3.1 1 23 548 570 548 570 0.98

15 16 3.1e-08 2.4e-06 27.3 0.6 1 23 576 598 576 598 0.98

16 16 0.0098 0.76 10.0 0.7 2 23 605 627 604 627 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.64	50	4.3	0.8	1	19	180	198	180	202	0.92
2	16	0.0062	0.49	10.6	3.3	2	23	213	235	213	235	0.94
3	16	3.5e-05	0.0027	17.7	0.1	1	23	242	264	242	264	0.98
4	16	2e-06	0.00015	21.6	3.4	1	23	270	292	270	292	0.96
5	16	0.41	32	4.9	0.1	1	13	301	313	301	314	0.88
6	16	3.6	2.8e+02	1.9	0.7	11	23	319	331	316	331	0.88
7	16	5.9e-07	4.6e-05	23.3	2.2	1	23	337	359	337	359	0.98
8	16	1.3e-07	1e-05	25.3	0.9	1	23	364	386	364	386	0.98
9	16	0.00019	0.014	15.4	1.3	1	23	393	415	393	415	0.98
10	16	1.5e-06	0.00012	22.0	0.6	1	23	434	456	434	456	0.99
11	16	5.4e-07	4.2e-05	23.4	0.5	2	23	464	486	463	486	0.96
12	16	0.0018	0.14	12.3	0.6	1	23	492	514	492	514	0.97
13	16	0.00033	0.025	14.7	3.1	1	23	520	542	520	542	0.98
14	16	7.8e-07	6.1e-05	22.9	3.1	1	23	548	570	548	570	0.98
15	16	3.1e-08	2.4e-06	27.3	0.6	1	23	576	598	576	598	0.98
16	16	0.0098	0.76	10.0	0.7	2	23	605	627	604	627	0.91

Sequence Information

Coding Sequence: ATGACTAATTTCGAGTATAATGATGAAGATAGATATCGTGAATTAATCTCATTATACGAAATAGAAATAAACAATGAAATGTGTATGGATTCAACAGTTCCAACAGTTGATGATTTAGCAGCAATAACAGACAAAGATAAATCTAGTAATATATCTGTAGCAGAATTGAATAATCAAGTAACTGAAAATAATTCAACAGCACAAGTAATACAAGTTAATCAAACAGTAATACAATGTCTAAATGACACATCAACAAAATTAAATGATCGTTTTAAGTATGTACTTCAATCAGATTTAAATAATTTATTATTAGAACCATTAGCATCGCTCGAGTCTGCAAACAATACACCAAATAATCCAGTTGTTGAAAATAATGTTAAAAGTTTAATTATGGAAAATGACCAACAGCAATCACAGGAGCAAATAAGTTTATGTAGCAGAAATGATAAATGTGATATTGTTGAAAATATATTCGATGGTGAACAAACATTTGAAGACACTAATGCGTTGTATAATAATCAAAATGGTTATCCAGCATTTAGATGTAAAAAGTGTAAGGATTTATTTAACAATGAAGAAGATTTATTAATTCATGACTTATATCATACCAGAACAACTTTTCCAGATCAAGAACGCAAATGCGGACATTGTTCATCGTCATTTTTCAATCGTAAGGATCTGCAAAATCATATTTCCGAAAAACATAGCGGACTACAAATGCTATTCAAATGCGGAGTTTGTGACAAAGTTTATGAAAAATGGTCAAGCCTAGATGTTCATGAGGCTACGCATCGTCAAGATAAACCGTATCTCTGTGATCTTTGTGGTAAAAGTTTTAAGCATTCTAATAATTTAAGAGGACACAAACGTACACATTTAGATGTTGCTAAGAGAAAAAGGCACAATTGTGAAATATGTGGAAATGCTTTTAGATCAAGGATTAGAGTTAGTATCACAAAAAAATTTCATTTGAAAGAGCATATAAATCAACATAATGGCGATAAACCTTACAAATGTGAGCAATGTGGAAAATCCTTTTCCAAAAGAATTCAATTGCGACAACACCGACTTTCGCATGGTTTAAATAAACACACTTGTCCTATCTGCGGAGTATCATTCAATCGCCGAGCTAATATGAATGCACACATGAAAAGGCACGCTAAAAATGATGGGATGTACACTTGTAGCGTATGTGAAAGCAGATTTAAATCAATGAGCGAGTTAAAATTACATCAAAAAGATCACACCGAAAATGATATCCTTGAAAGTATTAAAAAAAAATGCAATGACAAAGAAATATACCAGTGTAAAATATGTTCAAGAGCATTTCCAAAACGCTCTGCATTGTTGAATCATGAGCGTACGCACAATGGTACACAGCCGCGAGTTGAATGTGATATATGCGGAAAAAAATTTGCTAACAAAAGTTCATTAAAATACCATACTAAATCAATACATTCAACGGAAAGGCCACACACGTGTCAATTCTGCGATGAAGCGTTCGTTACAAAAGAAGCGCGTCTTGTCCACGAAAGAATACACACTGGCGAACGCCCCTACGTATGTAAAATATGTAATATGCAATATAGATGCTCAAGTAATCTTAGTCAGCATATGAAAGTTCATTCTGAAGTACGACCTCATACATGTCAACAGTGTAATAAAAGTTTCACACGTAAAGGCGCATTAACTATTCATGAACGTACTCATACTGGTATTAAACTATTTACCTGCACGATTTGTGATAAAATATTTTCACAAAAGTCTGAACTAATTAAACATGTTAAAGTACATCAAGTACATAAAATACTGAGTTGTGAATATTGTAATCAAATATTTTATTCTAAGACTGATATTTCTAAGCACTTTGACAGTGTTCATAAAATTTATTCTAATAATACAAACGGTTTTTTGATTAATGATAAACGGATTGTTATAACTGAGAATTTAGAGATATACTCGCTGGATATAAATACTTGCAATATCAAAGAATCTACTGGTGAATTAAATTAA
Protein Sequence: MTNFEYNDEDRYRELISLYEIEINNEMCMDSTVPTVDDLAAITDKDKSSNISVAELNNQVTENNSTAQVIQVNQTVIQCLNDTSTKLNDRFKYVLQSDLNNLLLEPLASLESANNTPNNPVVENNVKSLIMENDQQQSQEQISLCSRNDKCDIVENIFDGEQTFEDTNALYNNQNGYPAFRCKKCKDLFNNEEDLLIHDLYHTRTTFPDQERKCGHCSSSFFNRKDLQNHISEKHSGLQMLFKCGVCDKVYEKWSSLDVHEATHRQDKPYLCDLCGKSFKHSNNLRGHKRTHLDVAKRKRHNCEICGNAFRSRIRVSITKKFHLKEHINQHNGDKPYKCEQCGKSFSKRIQLRQHRLSHGLNKHTCPICGVSFNRRANMNAHMKRHAKNDGMYTCSVCESRFKSMSELKLHQKDHTENDILESIKKKCNDKEIYQCKICSRAFPKRSALLNHERTHNGTQPRVECDICGKKFANKSSLKYHTKSIHSTERPHTCQFCDEAFVTKEARLVHERIHTGERPYVCKICNMQYRCSSNLSQHMKVHSEVRPHTCQQCNKSFTRKGALTIHERTHTGIKLFTCTICDKIFSQKSELIKHVKVHQVHKILSCEYCNQIFYSKTDISKHFDSVHKIYSNNTNGFLINDKRIVITENLEIYSLDINTCNIKESTGELN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -