Basic Information

Insect: Cotesia chilonis
Gene Symbol: -
Assembly: None
Location: scaffold31:48555-50612[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00019 0.015 15.4 0.6 1 23 55 77 55 77 0.96

2 17 0.0037 0.29 11.3 3.1 1 23 83 106 83 107 0.94

3 17 0.0001 0.0082 16.2 6.1 1 23 168 190 168 190 0.97

4 17 1.7e-05 0.0014 18.7 2.3 1 23 198 220 198 220 0.99

5 17 9.1e-07 7.1e-05 22.7 1.3 1 23 226 248 226 248 0.98

6 17 1.6e-05 0.0012 18.8 1.0 2 22 255 275 254 275 0.95

7 17 0.00026 0.02 15.0 5.9 1 23 286 308 286 309 0.95

8 17 1.6e-06 0.00012 21.9 1.0 1 23 315 337 315 337 0.97

9 17 0.00052 0.041 14.0 1.1 1 23 343 366 343 366 0.97

10 17 0.04 3.1 8.1 2.5 1 21 372 392 372 394 0.96

11 17 1.4e-07 1.1e-05 25.3 2.9 1 23 399 421 399 421 0.98

12 17 1.4e-05 0.0011 19.0 2.9 1 23 427 449 427 449 0.97

13 17 2.1e-06 0.00016 21.6 1.3 1 23 455 477 455 477 0.99

14 17 0.22 17 5.8 0.6 1 14 483 496 483 497 0.91

15 17 9.1e-05 0.0071 16.4 5.4 1 23 502 524 502 524 0.98

16 17 0.00069 0.054 13.6 2.5 1 23 530 553 530 553 0.98

17 17 0.0001 0.0081 16.2 3.6 1 23 558 580 558 580 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00019	0.015	15.4	0.6	1	23	55	77	55	77	0.96
2	17	0.0037	0.29	11.3	3.1	1	23	83	106	83	107	0.94
3	17	0.0001	0.0082	16.2	6.1	1	23	168	190	168	190	0.97
4	17	1.7e-05	0.0014	18.7	2.3	1	23	198	220	198	220	0.99
5	17	9.1e-07	7.1e-05	22.7	1.3	1	23	226	248	226	248	0.98
6	17	1.6e-05	0.0012	18.8	1.0	2	22	255	275	254	275	0.95
7	17	0.00026	0.02	15.0	5.9	1	23	286	308	286	309	0.95
8	17	1.6e-06	0.00012	21.9	1.0	1	23	315	337	315	337	0.97
9	17	0.00052	0.041	14.0	1.1	1	23	343	366	343	366	0.97
10	17	0.04	3.1	8.1	2.5	1	21	372	392	372	394	0.96
11	17	1.4e-07	1.1e-05	25.3	2.9	1	23	399	421	399	421	0.98
12	17	1.4e-05	0.0011	19.0	2.9	1	23	427	449	427	449	0.97
13	17	2.1e-06	0.00016	21.6	1.3	1	23	455	477	455	477	0.99
14	17	0.22	17	5.8	0.6	1	14	483	496	483	497	0.91
15	17	9.1e-05	0.0071	16.4	5.4	1	23	502	524	502	524	0.98
16	17	0.00069	0.054	13.6	2.5	1	23	530	553	530	553	0.98
17	17	0.0001	0.0081	16.2	3.6	1	23	558	580	558	580	0.98

Sequence Information

Coding Sequence: GTTATTGTAAAACAAGAAAACGATGTTGATCCTTTAGCTATAGATGTTAAGCCTGATCAACAAGAGTTGAATAACGTCTTATTGGAAAATTATAATAAAGAATCATGTATATTAGAAGGACTCCTAAAACAGTATAAGCGTACTGAAATAAGTAACAAAAAGTTTGAGTGTGATATGTGTCCAAAAAAATACGTCTTGAAGCAATCTTTACAAAGGCACAAGGTTGTACATATGAAAAAACTAAAATTTTCCTGCAAAATTTGTTACTTTCAAACAAACTCGAATTCATTATTAAAAAAACATATCGCAAATAACCATCACATTACAAGACCGGTACTACGTAATGTTCGGGGCTCAAAATTGAGTCAAAGCTCACAATTGAAAAAAAAAATTCATAGAAAGAGCAAGAAATTACAAGAAAACAATACTCGTTGCTTGAAATCAATGAAAAAATCACTGTTGAAGAAATCTATCGAAAATCGTCAATGCTTACAAAAGAGCCATACTTGTAAAGTTTGTCATAAAGTATATGCTACGAAACATACTTTAGAGCGACACAAAATTGTTCATGTAATAAAAAAAAAACAAAACTTTCAGTGTGAAGTTTGTAATCTAATATGTACTCGACAATCAAGCTTAGGAAAACATCTTAAGACTCATATAAACAATGAAATATTTAAGTGTGATATTTGTAAAAAAATCTTTCGTCGAAAGTTAACTCTGATTCGACACATGATTTTACACGATCTGAAAATAAGAGTTGAGTGTGATAACTGCCACTCAACTTATACTCGGAAGAGCAGTTTAATTCGACACATGCGTTCTTGTTTTTGGAATTTACCTGCCGATAGACCATTTACATGCGATATTTGTAATTCCAACTATTCGAGAAAATCACATTTGGAATCTCACATTATACATCATCACTTGAAAGGTGAACATTTTAATTGTAAAATTTGTCAACGAAATTTTTCTCGAACGTCATCTTTAGAAAATCATATACTTATCCACATACGGGGGAAAATATACAAATGTGATATTTGTCATTCCAAATACTCTGAAGAAACTGCGTTAGCTCAACATATGCGTGACACTCACAAAAACGAAAAATCTTTCAAATGTGACAATTGCCAGGCTGAATTTTTAACTAAACAAAATTTATCGATTCATATAAGATGTCATAAAACGGAAAGATTCGAATGTAGTATTTGTCAACGAAGCTTTTCTCGAAATTTCAATCTCAAACAGCACATGTATACTCACACAAACGAAAACGTATTCAAGTGTAACATTTGTCACTTAAAGTTCACTCAAGAGTCAATGTTAACTACGCATCTTGAAAATCATACTCGTGATAAACAATATAAGTGTGATGTTTGTGAAGCAATTTTTCGTCAAAAATCAAAACTGAACAAGCACAGACTTACTCACACGAGAGAAAAATCATTTGAGTGCGATATTTGTCAAGCTTTCTTCTCCCAAAATCACAGTGATAAAAAAGTTTTCAAGTGCGACATTTGTGAAAGAATCTTTTCTCATCATTTTAGTTTAAAACGACACAAACTTATTCATACGGGCAACAAACAATTCAAATGCGATACTTGTTCAGCTAAATTTTTCACAATTCAATCTTTAACAAAGCACATTAAAAAGTCACACAAAAATGAAGAATACAAATGTAATATTTGCAAGAAACACTTTTCTGCGAAGGGTTGGCTTGACAGGCATCATCTTATTCATGCAAAGGATGAACTAGTATCTATTACAAAAAATGAACGTTTAGATCATACAAGTGAT
Protein Sequence: VIVKQENDVDPLAIDVKPDQQELNNVLLENYNKESCILEGLLKQYKRTEISNKKFECDMCPKKYVLKQSLQRHKVVHMKKLKFSCKICYFQTNSNSLLKKHIANNHHITRPVLRNVRGSKLSQSSQLKKKIHRKSKKLQENNTRCLKSMKKSLLKKSIENRQCLQKSHTCKVCHKVYATKHTLERHKIVHVIKKKQNFQCEVCNLICTRQSSLGKHLKTHINNEIFKCDICKKIFRRKLTLIRHMILHDLKIRVECDNCHSTYTRKSSLIRHMRSCFWNLPADRPFTCDICNSNYSRKSHLESHIIHHHLKGEHFNCKICQRNFSRTSSLENHILIHIRGKIYKCDICHSKYSEETALAQHMRDTHKNEKSFKCDNCQAEFLTKQNLSIHIRCHKTERFECSICQRSFSRNFNLKQHMYTHTNENVFKCNICHLKFTQESMLTTHLENHTRDKQYKCDVCEAIFRQKSKLNKHRLTHTREKSFECDICQAFFSQNHSDKKVFKCDICERIFSHHFSLKRHKLIHTGNKQFKCDTCSAKFFTIQSLTKHIKKSHKNEEYKCNICKKHFSAKGWLDRHHLIHAKDELVSITKNERLDHTSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -