Cchi002961.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia chilonis
Gene Symbol
-
Assembly
None
Location
scaffold5:2244808-2249072[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 5.3e-05 0.0042 17.1 1.4 1 23 218 240 218 240 0.96
2 18 1.1e-05 0.00084 19.3 1.9 1 20 246 265 246 268 0.94
3 18 1.8e-05 0.0014 18.7 0.7 1 23 274 296 274 296 0.98
4 18 4.3e-05 0.0034 17.4 4.4 1 21 302 322 302 324 0.95
5 18 1.3e-05 0.001 19.0 4.6 1 23 330 352 330 352 0.99
6 18 1.3e-05 0.001 19.0 5.3 1 23 358 380 358 380 0.97
7 18 5.1e-06 0.0004 20.4 7.1 1 23 386 408 386 408 0.97
8 18 5e-08 3.9e-06 26.7 2.7 1 23 414 436 414 436 0.98
9 18 3.7e-05 0.0029 17.7 6.7 1 23 442 464 442 464 0.97
10 18 1.1e-05 0.00089 19.3 5.8 1 23 470 492 470 492 0.98
11 18 3e-07 2.4e-05 24.2 2.9 1 23 498 520 498 520 0.98
12 18 4.5e-06 0.00035 20.5 7.8 1 23 526 548 526 548 0.98
13 18 1.4e-05 0.0011 19.0 9.1 1 23 554 576 554 576 0.98
14 18 1.9e-05 0.0014 18.6 7.5 1 23 582 604 582 604 0.98
15 18 0.00089 0.07 13.3 8.8 1 21 610 630 610 632 0.94
16 18 6.8e-06 0.00053 20.0 0.4 1 23 638 660 638 660 0.98
17 18 0.016 1.3 9.3 4.5 1 23 670 692 670 692 0.98
18 18 2.6e-07 2e-05 24.4 1.3 1 23 698 720 698 720 0.97

Sequence Information

Coding Sequence
ATGCAGAATCACCAGGCCAACGCTGGACAGAACTCACAGAATCAATCGGCCCAGCGTGATGACAAAATCAAGGATGAGGGTGGCAGTTGTACCACCGAGCGTTGCAGCGATAGCCAAGTACACTGTCAGGTACAATGTGATCTTCAACTTCAGCAACCGCAAGACTTACAACAGATGAACATCAGTGGGAATCCTGGGACGGATAGCGGTAATCAAAATAATGCGGAGAAACCAGAGAAGGAAAAAGAATTGCGACAACTTAATATGACACAGTTTCAAGTACCAGATTTGAAAGCTGGAAGCCATATGATGGATGTTAGAACGGCAGATGGATCATTAGTCAAAATAAGTGCGGGTAATGAGCAAGACCTTGCTAAAACTCTTAATGTTGAGATGGTACAAAATATGTACAAGGTTAATGTCGAAGATATTAATCAACTGCTGGCCTATCACGAAGTGTTCGGTAAGCTTCAGAGTGAAATAGCAGCCGGAACAACTTTAGTCGGCGGTACAGTGCCGACACAAACTGTTACCACTATCCAGAATGGTACACCGCTGGCACAACAAGTGCAATTGAATAAATTTGACATTACCAAGAGCGATGGGGAGGCAACACCTGGACCTAGCGCCTCCCCAGTCTCCGTGGGCAGTCACGCGTGCGAGGTCTGCGGGAAGATCTTCCAATTTCGCTATCAGCTGATAGTTCATCGTCGTTACCATACCGAAAGAAAGCCGTTCACGTGTCAAGTTTGTGGTAAAGCATTTTCAAACGCAAACGACTTGACTCGTCACGGCAAGTGTCATCTTGGAGGCTCTATGTTTACTTGTGCCGTTTGCTTTCACGTATTTGCAAACGCGCCGTCTCTCGAACGCCATATGAAACGCCACGCTACTGATAAACCCTACAATTGTACTGTTTGCGGAAAGAGCTTTGCTAGGAAAGAGCATCTGGATAATCACACCCGTTGTCATACTGGTGAAACACCTTACAGATGTCAATATTGCGCGAAAACTTTCACACGCAAGGAACACATGGTGAACCATGTGAGAAAACATACTGGCGAAACGCCTCATCGCTGTGACATCTGTAAGAAGAGCTTCACCCGCAAAGAACATTTTATGAACCACGTAATGTGGCACACTGGCGAGACACCTCATCATTGCCAGGTTTGCGGGAAAAAGTACACGCGCAAAGAGCACTTGGCAAATCACATGCGCTCTCACACCAATGATACGCCTTTCCGCTGTGAAATTTGTGGCAAGTCGTTCACAAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACACCCCATCGCTGTGACTTTTGTTCGAAGACATTTACCCGGAAAGAGCATCTATTGAACCATGTACGTCAACACACGGGTGAGTCTCCTCATAGATGTGGCTTCTGCTCTAAATCATTCACCAGAAAGGAACATCTTGTTAATCATATTCGTCAACATACTGGTGAAACTCCATTCCGTTGTCAGTACTGTCCAAAAGCATTCACACGTAAAGACCACCTGGTGAATCACGTCAGACAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGCGCAAGGAGCATTTGACAAATCACGTACGTCAACATACAGGCGAGTCGCCCCATCGTTGTCACTTCTGTTCAAAGTCATTTACACGCAAAGAGCATTTGACGAATCACGTCAGAATCCACACCGGTGAGTCTCCGCACAGATGCGAATTTTGCCAGAGAACATTTACGAGAAAAGAACATCTGAATAATCATTTACGACAACATACTGGAGATTCATCTCATTGCTGCAATGTCTGCTCTAAGCCCTTTACCCGAAAGGAGCATTTGGTAAATCACATGCGTTGTCATACCGGTGAAAGGCCATTCGTTTGTACTGAATGCGGTAAAAGCTTCCCTTTGAAAGGCAACCTGCTCTTCCACATGCGTTCACACAACAAAGGCAGCAATGCCGAGCGGCCCTTCCGCTGCGATCTTTGTCCGAAAGATTTTATGTGCAAGGGCCACTTGGTGTCTCACCGACGCTCTCACTCGGATGAGCGACCCCACAGCTGTCCCGATTGCGGGAAGACTTTCGTTGAGAAAGGCAACATGCTCAGACACTTGCGGAAGCACGCTGCCGAGGGTCCGCCGACCCAAGTCACCACGCCGTCAGCGATCCCACAGCCCGGGGTTTTACCGATTCCTACAGCCGCGGCTGTTCTTGTCGGCCATCCTCTCGCTCCACCCGCGCCTCCAGTCGTTCCACAACACACCGTTGTTGTTCCTACTCCGCCGGGTGTGCTTACTTCTTATTGA
Protein Sequence
MQNHQANAGQNSQNQSAQRDDKIKDEGGSCTTERCSDSQVHCQVQCDLQLQQPQDLQQMNISGNPGTDSGNQNNAEKPEKEKELRQLNMTQFQVPDLKAGSHMMDVRTADGSLVKISAGNEQDLAKTLNVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPLAQQVQLNKFDITKSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVTTPSAIPQPGVLPIPTAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00379809; iTF_00382046;
90% Identity
iTF_00379809; iTF_00382046;
80% Identity
-