Cchi011795.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold92:176643-177407[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-09 2.3e-06 26.9 0.2 4 42 14 52 12 55 0.91 2 2 1.3 6.6e+02 -0.2 0.0 16 23 134 142 130 144 0.79
Sequence Information
- Coding Sequence
- ATGAAAACAAAGCTTAAAAGAAATAAATATGATTCATCAAATATTGAAAAAGCTTTACAAGCAATAAAAGATACAGGATTATCTATACGAAGGGCAGCTGCTGCTTATGGAGTATCTGTAGCCACACTGGCTAGAAAAAAAAATGTTGGTCCTGAGAAAGCAAAAAATAAAACAGGTCCAGATACAGTTTCATCACCGAATGAAGAGGATAATATTGTTCAGTGGGTGCTGTACAGAGCATCAATGGGAGCTCCTGTGACTAAAACTGAACTATTAGATTGTGTGCAAAGATATGTTCAAACTATGGAAATCAAAACTCCGTTTACGGATAACCGTCCCAGTCGACACTGGTATGAAGGTTTCCGAAAACGTCATCCTGAGTTAACCATTAGGAAACCCCAACATTTGAGCACAAGTAGGGCAGCTGTTAATCGTGAAGAATTGCAAGAGTGGTTCAAGGATTCTGGGAAATATTTAGAAAGTAAAAATTTATTAAATATTCCTGCCTCTAGAATTTTTAACTGCGATGAAAGTAGTATCCTTCTGTATCCTGACGCCGGAAGCGTGTTAGCTGAAAAAGGATCTCGTGCAGTTTATAAAATAGTTGATGGTGGCAAAGAATCATTGACTATTTTATTCACGTACAGAGCAGATGGAACTCGTGTTCCTCCAATGCTTATTATACCTAAGAAAATAGTGGAAAATACTCCAACAGGATGGGGTCTTGGAGTATCGGACAGTGGCTGA
- Protein Sequence
- MKTKLKRNKYDSSNIEKALQAIKDTGLSIRRAAAAYGVSVATLARKKNVGPEKAKNKTGPDTVSSPNEEDNIVQWVLYRASMGAPVTKTELLDCVQRYVQTMEIKTPFTDNRPSRHWYEGFRKRHPELTIRKPQHLSTSRAAVNREELQEWFKDSGKYLESKNLLNIPASRIFNCDESSILLYPDAGSVLAEKGSRAVYKIVDGGKESLTILFTYRADGTRVPPMLIIPKKIVENTPTGWGLGVSDSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -