Coce024580.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776271.1:2326434-2329515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.6 2.5e+02 3.1 0.0 2 23 88 110 87 110 0.90 2 14 0.0037 0.26 12.5 0.3 3 23 138 158 136 158 0.96 3 14 0.00075 0.052 14.7 0.7 1 23 162 185 162 185 0.94 4 14 0.68 47 5.4 0.6 1 22 189 210 189 210 0.94 5 14 0.0035 0.24 12.6 1.4 1 23 217 240 217 240 0.93 6 14 0.0031 0.22 12.8 1.5 1 23 247 270 247 270 0.97 7 14 0.0034 0.23 12.7 1.2 3 23 277 297 275 297 0.92 8 14 0.49 34 5.9 0.6 3 23 431 451 429 451 0.88 9 14 0.089 6.2 8.2 0.4 3 23 457 478 456 478 0.94 10 14 0.073 5.1 8.5 1.4 1 22 482 503 482 503 0.94 11 14 0.002 0.14 13.3 4.4 1 23 510 533 510 533 0.94 12 14 6e-05 0.0042 18.2 0.6 1 23 540 563 540 563 0.96 13 14 0.00032 0.022 15.9 4.2 1 23 568 590 568 590 0.97 14 14 4.2e-07 2.9e-05 25.0 1.2 1 23 596 618 596 618 0.99
Sequence Information
- Coding Sequence
- atgTTTATTTGCCAGAATATAGaAAACAAAGCACACACCAAACGGAACGCTGAGCTCGTCTTAAAGTATTCGACGCTGTACCCATTCAGGTTGCGAGGGAAAACCTTGATATGTGTTTACTGCTGCGATGAAATGGAAGATCCGGACGAGTACAGATGTCATATGGATGAGACGCATAAGACTGTTAATCTATACACAGCTTTCGCGCACACCAGTAGGTGTAGATCGAGAGACTATTTGAAGGTTGACTGCGTTAATTTGAAATGTAAACTGTGCGAGGATCCCTTTGCTACAGTCGCTGATGTAGCTCAACATCTTTTGGATAGTCATAACAGTGGCGAAATAAAGGATTTAAACTTGCAATTTGAAATAGGTTTGCATCCGTATCGACTAGTTAAGGACAAATGGATCTGCATGGTCTGTAATGAGAAACTGCCGAGTTTGACCAAACTAACCAGACACATGTCAACTCACTACGCGGATTACTTTTGCGACATATGTGGCAGAAGCTATCTGAACCCAGACAATTTGAAATATCATGTCAAGTTCAGCCATTCGGAGAAACACATCTGTAGAAAATGTATGAAGGAATTCCCTACAGCGGAAGAGCGGAAGGATCACCTAAAAACATCGACTAAGTGCCGGCCGTTTGCTTGCGTTCATTGCGGAGAGAGATTTTTCTCTTGGGAGCAGAAACAGAAACATTTGGTCAGCCAGCATAACGTTCAGGCGGCGACATATCCATGCCCGGAATGTGCTGTCGTGTTCAACTCGAGGAAACACTTTTACGATCATTATACAACAACGCATTCCGATCTGGCACTTATGTGCTCATGTTGTGGGAAGAAGTTCGGAAGCAAGAGTTTGCTGAATGAACATCTTGTTATACACACCGCACGCGATATGGCGAATCGGAACGCTGAAATTGTGTTACAGTACTCCACACTGTATCCATTCAGGGTGCGCGGCAAAAACTTGATGTGCGTTTACTGCTGTGACGAAATCGAAGATCCGGACGAATTCAGATGCCATATGGATAAAATGCACAAGACTGTAAACCTTCAAACAGCTTTCGCGCACGTTAAATGTAGAAATAGAATGAACGAGAGGGACTATCTAAAAGTTGATTGCATCAACTTGAAATGCAGACTGTGTGAAGAACCTTGCGATACAGTCGCTATACTAGCCCAGCACCTTAAGGATCATCATGAAAATAACGATATAACAAATATGGATTTAAATTACGATATTGGTCTGCATCCCTTCCGTTTGATTAAAGACAAATGGATTTGTATGGTCTGCAATAACAAACAACCAACTTTGACTAAGCTCACCAGACATATGTCTACTCATTTCGCGGATAATGCATGCGAAGTGTGCGATAAAACTTATCTAACAGTTCAAAGCTTAAGATACCACATAAAGTTCAATCACTCTAAGAAACACATCTGCAGGAAGTGTACGATGGAGTTTTCCACGTCAGAAGAAAAGAAAGAACACTTGAAAACATCACCGAAATGCTGGGGCTTCGTTTGTGTTCATTGCAAGGAAAGATTTTCTTCTTGGGATCATAAACGGAGGCATTTAGTTAGCAAGCACAACGCTAAAGCCGTTTCGTATCCATGCCCGGATTGTGGGGCTTTTTTTAAGTCGAGTTCGAGCTTTTACTATCACTATAGCATGGTCCATTCGGATATGCCTCATATGTGCTCGTACTGTGGGAGACGGTTTGGGAAAAAATGTCAACTAATCGATCATATGGGCACACATGCCGATGAGAAACAATTTCAGTGCAACGTTTGCTCGAAAGCATTCGGTAGAAAAAAAGGCTTACGAGACCACATGCGGACGCATTTCGGTCCTAAAAGATTTGTAGTATGA
- Protein Sequence
- MFICQNIENKAHTKRNAELVLKYSTLYPFRLRGKTLICVYCCDEMEDPDEYRCHMDETHKTVNLYTAFAHTSRCRSRDYLKVDCVNLKCKLCEDPFATVADVAQHLLDSHNSGEIKDLNLQFEIGLHPYRLVKDKWICMVCNEKLPSLTKLTRHMSTHYADYFCDICGRSYLNPDNLKYHVKFSHSEKHICRKCMKEFPTAEERKDHLKTSTKCRPFACVHCGERFFSWEQKQKHLVSQHNVQAATYPCPECAVVFNSRKHFYDHYTTTHSDLALMCSCCGKKFGSKSLLNEHLVIHTARDMANRNAEIVLQYSTLYPFRVRGKNLMCVYCCDEIEDPDEFRCHMDKMHKTVNLQTAFAHVKCRNRMNERDYLKVDCINLKCRLCEEPCDTVAILAQHLKDHHENNDITNMDLNYDIGLHPFRLIKDKWICMVCNNKQPTLTKLTRHMSTHFADNACEVCDKTYLTVQSLRYHIKFNHSKKHICRKCTMEFSTSEEKKEHLKTSPKCWGFVCVHCKERFSSWDHKRRHLVSKHNAKAVSYPCPDCGAFFKSSSSFYYHYSMVHSDMPHMCSYCGRRFGKKCQLIDHMGTHADEKQFQCNVCSKAFGRKKGLRDHMRTHFGPKRFVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -