Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: -
Assembly: GCA_963675405.1
Location: OY776271.1:1625777-1638840[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.072 5 8.5 0.7 1 23 263 286 263 286 0.96

2 20 0.74 51 5.3 1.0 2 23 312 333 311 333 0.96

3 20 0.012 0.8 11.0 4.6 1 23 353 375 353 375 0.99

4 20 0.014 0.96 10.7 0.1 1 23 379 401 379 401 0.87

5 20 0.0024 0.17 13.1 0.6 1 23 405 428 405 428 0.97

6 20 0.015 1 10.7 2.5 1 23 434 457 434 457 0.98

7 20 0.23 16 6.9 0.1 1 23 513 536 513 536 0.93

8 20 0.0037 0.26 12.5 1.6 2 23 607 628 606 628 0.96

9 20 0.0072 0.5 11.6 1.6 1 23 632 654 632 654 0.97

10 20 0.05 3.5 9.0 1.8 1 23 658 681 658 681 0.96

11 20 0.051 3.6 8.9 3.7 1 23 687 710 687 710 0.96

12 20 0.16 11 7.4 1.9 1 11 717 727 717 731 0.90

13 20 0.58 40 5.6 2.8 1 23 780 803 780 803 0.92

14 20 0.00067 0.046 14.9 0.3 1 23 872 894 872 894 0.97

15 20 0.0036 0.25 12.6 0.1 1 23 898 920 898 920 0.97

16 20 1.2 87 4.6 0.8 2 23 925 947 924 947 0.81

17 20 0.0019 0.13 13.5 1.6 2 23 952 974 951 974 0.96

18 20 0.02 1.4 10.2 2.3 1 23 980 1003 980 1003 0.93

19 20 0.0035 0.24 12.6 1.2 1 23 1009 1032 1009 1032 0.96

20 20 0.00011 0.0079 17.3 1.2 1 23 1038 1060 1038 1060 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.072	5	8.5	0.7	1	23	263	286	263	286	0.96
2	20	0.74	51	5.3	1.0	2	23	312	333	311	333	0.96
3	20	0.012	0.8	11.0	4.6	1	23	353	375	353	375	0.99
4	20	0.014	0.96	10.7	0.1	1	23	379	401	379	401	0.87
5	20	0.0024	0.17	13.1	0.6	1	23	405	428	405	428	0.97
6	20	0.015	1	10.7	2.5	1	23	434	457	434	457	0.98
7	20	0.23	16	6.9	0.1	1	23	513	536	513	536	0.93
8	20	0.0037	0.26	12.5	1.6	2	23	607	628	606	628	0.96
9	20	0.0072	0.5	11.6	1.6	1	23	632	654	632	654	0.97
10	20	0.05	3.5	9.0	1.8	1	23	658	681	658	681	0.96
11	20	0.051	3.6	8.9	3.7	1	23	687	710	687	710	0.96
12	20	0.16	11	7.4	1.9	1	11	717	727	717	731	0.90
13	20	0.58	40	5.6	2.8	1	23	780	803	780	803	0.92
14	20	0.00067	0.046	14.9	0.3	1	23	872	894	872	894	0.97
15	20	0.0036	0.25	12.6	0.1	1	23	898	920	898	920	0.97
16	20	1.2	87	4.6	0.8	2	23	925	947	924	947	0.81
17	20	0.0019	0.13	13.5	1.6	2	23	952	974	951	974	0.96
18	20	0.02	1.4	10.2	2.3	1	23	980	1003	980	1003	0.93
19	20	0.0035	0.24	12.6	1.2	1	23	1009	1032	1009	1032	0.96
20	20	0.00011	0.0079	17.3	1.2	1	23	1038	1060	1038	1060	0.98

Sequence Information

Coding Sequence: atggATTTCGCTGAAGTGACTGTGAAGGAGAGCCCTGGCCTCTGCCGGTGCTGTCTATCCGAGGGCTGCTACAAGGATCTCGGGACGGAATATTCATGGATGAACGATACAGAAGTTTACGCCGATATGCTGTTAGATTGTTTTGATATTGGCATAACCCAACACAATGATGGCCCGAACGGTGCAAAGCGGCTCATCTGTGAAGTGTGCATCACCCGACTGCGGGATGCCTGTAACTTCAAGAAACAAGTGGTGGACTCGGAAAAGAAGTTTATTGACATGCTCGGCCGGGGAGAGTTCCGGCAAATAGAAAAACAAACAGTGCTTCTGCCAATATACTCCAGCACAACACCGATGAAGGCAGAAGCTATCGAAGAAGTGACAGTGACAGAGGATTACGATGACCCACAAATGCAGTTTCTTGATGATGCAGATTTTACTGATGATGATGATGTTAAGAGGGAGACAAGGTCTAACCCCGCACCGGTTGCGTCGACTTCGACTATGAAACGAGGACGTCCCAAGAAGACTGGTAGTGAGGTGCCGGAGAAGAAGCCGAAGTTGAAGGGGAAGTCGAAGATTGCTAAAGGTGGCATACCGGCTATCGCTGAGGCGTCGAGTAAGTCCTCACCGCGTAAGACCACACCCAATAAGACCTCATCTAATAAGACCTCACCCAATAAGACCCCGCCTAAAACTTCACAGTTAGACCAAACGGTAAAGACAAATGTGGTCAGTATCTTGCAATACTCCACTGTGACTCCATTCCGATGGCACAAGCAGTTTTTTATGTGCTTTTACTGCCATTTACCTATACAGACATTTGACGCGCTCAAAAACCACATGATCATCGAACACAAGGACCCTAAAATAAAACCAGTCGTAGCCCTAATgaaaaaagatgaaaagaTAAAGATTGATATCACATCGCTGTCTTGCAAACTTTGCGAGCACAAACCAAAAGATCTAGAATCTCTGATAGACCATCTGAAAACGCACGATAAGATTAAAGATGACTGCGAATTGGCGGTCGTACCTTTTAATCTGACGGAGAAGTACAAATGCGTTATATGCAAAGAgaaatttcaatatttcatCAAGTTAAACCATCATATGAATAAACATTACGGGCATTATGTGTGCGAGATCTGTGGAAAATCATTTCTAAGCGGCGATCGACTGAGATCACACGCTGTTCGACACGGACTGAAATTTCCATGCGACATGTGTCCCGAGAAATTCGACACGCGTGATCAAAAGAACAACCATACTCAGAAAGTACACGAAAAGGAGAAAGATTTCAAATGCTATTACTGCTATGAAACGTTTTCTGTGAAAGCTAAAAGGTCTGCGCATCTTAAAACGACGCATAATATAGATATACCGGTGTATGATTGTGCCAAACGTCTCGAGCCCGTGGCGACCGACGAGGCTACACCAATCACACGCATTAAACAAAACCGCTTAATAAAGCTGAATACAATCACTATTCTCCAATACTCAACCGTCATCCCCTTTAAATGGCACAGGCAATGCTACCTCTGCTTCTATTGCAACTTACCTCTCAACACATTCGACGCTCTTAGAGTACATGTAGCATCCGaacacaaaaacacaaacatgAGATCTATAGGAATACTAATGAAGAAGGATGATAAAGTTAAAATTGATGTTGCGACAATCGGCTGTAAACTTTGCGATACGAAACCTAAAAATGTAGAAGCTCTTGTAGATCATCTCAAAAACGTGCACAATAAAGTGTTTTACGATAAACTGGGGTATGGAGTTATGCCGTATAAGCATAGTGCGGGCACCTGTCAATGCGCCATATGCGATGAGATCTTCCAATACTATATTAAGCTAAACCAACACATGAACAAACACTACGGGCATCACGTGTGTGAAGTTTGCGGTAAATCCTTCCTCAGCACCAGAAGACTTACGATTCATAGACTCACTCACGGCTCTGGCTTTCCTTGTAACAGTTGTTCTGAAACCTTCGACTCTTACAGTAAGAGGAAGAATCACTACGCGACGACTCATAACATCTCAAAGGTCCACAAGTGTTCCTATTGCTCTGAAACTTTCCCCAACTACGGCGCTAGGACGCTTCATCATAGATATGCTCATAATATTGACACGCCGATATTCAACTGTCCCGTTTGTGGAAAGACCTTTCGTATTTGCAGTGGCATTGGCACCGCTCCCGTTTCCTCGCAGCCGCTGGCACCGGTTTTGTCACTATCGACAACAATGCGAAATCGTTTAGTGAAACGGAACGCCACTATTATCCTACAAAGTACCACGGCGGTACCTTTCAAATGGCAACGGCAGTTCTACCTGTGTTTCTATTGCCATAAACAGTTCCAAGCCTTCGACGATCTCAGGGAACACTCTTACACCGAACATGAAAACACTAACGTTAAATCATCTGTATTGCTTTTGCGAGTAGACCCTTTGGTAAAAATCGATGTTGCGACATGGACTTGCAGGTTTTGCGATTTTGAACCTAAAAATTTAGACGTTATGGTCGAGCATTTGAAGCTCGTCCACAAAAAGGTGTTCGAAAACGCCGAATATGGGGTCATACCGTACAAACATAGAACTGAATCGTACGATTGCGGGATTTGTGACGAAAACTTCGCATACTTTGTAAAATTGAACCAACATATGAATTATCATTACGGTAAATACGTGTGCGATACTTGTGGCAAGTCGTATCTCAGTAACGATAGACTCAGAGCTCACGCACTCATACACATTAGCAGCGTGCGTTGCGAGTTCTGTCCAGAAACTTTCCGCTCGTTAACCATCAAAAAAACGCATGTAAACAAAATGCATGAACCTAAAATCAAATGCCAGCAATGCAGCAAAACGTTTTCTAGCTACAATCAGAGGAAAGTTCATCTGAAAATTGTTCATAACGTAGGCGCGTTGCATTCTTGTCCCGGCTGCGGTAAAGAGTTCTCCTGCAATAGCAGAATGGAACAACATTTGAAAGATGTGCATTATAAAGAGAAACGATTCAACTGCTCCATGTGTGAAAGGCAGTTCTATTCGAACTGGCAAGTGACTAAGCATGTACGGTTGAGTCACGCCGGAGGCAAAGTCCACCAATGCGAAGTGTGCCAAATCTCATTCGTTGGCTCAAAAACGTTGAAGATgcatatgaaaatccatagtGATTCTTCGCCTTCCACCTTGAATGACAAACTTCGAATAGACTAA
Protein Sequence: MDFAEVTVKESPGLCRCCLSEGCYKDLGTEYSWMNDTEVYADMLLDCFDIGITQHNDGPNGAKRLICEVCITRLRDACNFKKQVVDSEKKFIDMLGRGEFRQIEKQTVLLPIYSSTTPMKAEAIEEVTVTEDYDDPQMQFLDDADFTDDDDVKRETRSNPAPVASTSTMKRGRPKKTGSEVPEKKPKLKGKSKIAKGGIPAIAEASSKSSPRKTTPNKTSSNKTSPNKTPPKTSQLDQTVKTNVVSILQYSTVTPFRWHKQFFMCFYCHLPIQTFDALKNHMIIEHKDPKIKPVVALMKKDEKIKIDITSLSCKLCEHKPKDLESLIDHLKTHDKIKDDCELAVVPFNLTEKYKCVICKEKFQYFIKLNHHMNKHYGHYVCEICGKSFLSGDRLRSHAVRHGLKFPCDMCPEKFDTRDQKNNHTQKVHEKEKDFKCYYCYETFSVKAKRSAHLKTTHNIDIPVYDCAKRLEPVATDEATPITRIKQNRLIKLNTITILQYSTVIPFKWHRQCYLCFYCNLPLNTFDALRVHVASEHKNTNMRSIGILMKKDDKVKIDVATIGCKLCDTKPKNVEALVDHLKNVHNKVFYDKLGYGVMPYKHSAGTCQCAICDEIFQYYIKLNQHMNKHYGHHVCEVCGKSFLSTRRLTIHRLTHGSGFPCNSCSETFDSYSKRKNHYATTHNISKVHKCSYCSETFPNYGARTLHHRYAHNIDTPIFNCPVCGKTFRICSGIGTAPVSSQPLAPVLSLSTTMRNRLVKRNATIILQSTTAVPFKWQRQFYLCFYCHKQFQAFDDLREHSYTEHENTNVKSSVLLLRVDPLVKIDVATWTCRFCDFEPKNLDVMVEHLKLVHKKVFENAEYGVIPYKHRTESYDCGICDENFAYFVKLNQHMNYHYGKYVCDTCGKSYLSNDRLRAHALIHISSVRCEFCPETFRSLTIKKTHVNKMHEPKIKCQQCSKTFSSYNQRKVHLKIVHNVGALHSCPGCGKEFSCNSRMEQHLKDVHYKEKRFNCSMCERQFYSNWQVTKHVRLSHAGGKVHQCEVCQISFVGSKTLKMHMKIHSDSSPSTLNDKLRID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -