Coce015810.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cosmorhoe ocellata
Gene Symbol
-
Assembly
GCA_963675405.1
Location
OY776259.1:1688143-1706138[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0051 0.36 12.1 0.8 1 23 292 314 292 314 0.96
2 12 0.0012 0.085 14.0 0.4 2 23 322 343 321 343 0.94
3 12 0.15 10 7.5 0.8 1 23 347 369 347 369 0.97
4 12 0.0007 0.049 14.8 0.5 1 23 374 397 374 397 0.98
5 12 0.00091 0.063 14.5 0.3 1 23 401 424 401 424 0.94
6 12 0.015 1.1 10.6 0.2 2 21 442 461 442 466 0.92
7 12 0.00015 0.01 16.9 0.9 3 23 476 497 476 497 0.98
8 12 0.12 8.1 7.8 0.6 2 23 517 539 517 539 0.97
9 12 9.3e-06 0.00064 20.7 0.5 1 23 550 572 550 572 0.99
10 12 1.5e-06 0.00011 23.2 1.6 1 23 578 600 578 600 0.99
11 12 0.046 3.2 9.1 0.3 1 21 606 626 606 627 0.95
12 12 8e-05 0.0055 17.8 0.2 1 23 843 866 843 866 0.98

Sequence Information

Coding Sequence
atgaatatattcTTATCTGAAGAGAATACCGTAAAAGTATGTCGAGTTTGCCTAATCAGGGATGTGAAAATGTACGACTTGCAAAGTTACCCATtggaaacatattttgaagCTATTATTGGGATACCTgtGATGAGCACCATGGACATTCCACCATACCTGTGCTATGAGTGCGCTAGCCTGGTGAAGAAGTTTTCAATATTCAGAGAACGCTGTTTGACTGGACAGGCTACCTTGTACGGTATTCTTCAGAGCTCTGGAAAGGTCAcagataaagaaataaacaaaattgataGACAATTGTCACGGCTCTCATCAAAACTCTCCATACACATAGAGGAGAATATATTCTATGCGGAAGAGGGCACACTACTCCGGATAGTGAAAGAAGAACCGACCACTCCTGATGACTATGAGGTGCAATTcaaggaagaagaagaactttcCGTGCCGGATATACACTCCAGTGATGATGAGCCACTATCCGTGCATAAGGTGGTGAAAGAGAAAAAGAAAAGAGGCAGAAAGAGAAAAGAGCTGGTGGAAGAGGATCTGGAAGAATCAAAAAACGATTTAGACATTTCAAAGTTTGTAGAAGATGAATTGAAACTGCAAGATATATTTGGCCAACCAGACATCGAAGAGACGGAAGGTCAGATAAAGACAGAGGGAGCCAAACGCAAGCGAGGCCGGCCGCGGAAGGCAGTCTCACGGGCGGAGCCGGCCAAGTCTCGGAGGACCAAGAACACCGGTGGAGTCCACGTGGAAGATATCGACTTGGATGAATTCGTATCGGTCGTAAAGCTTACGCTAGAGGAGCAAATGGAGGAGATTAGGAAACGCAAGGAGTCCCTCAACTACCAGAACGCCGCCTTCCAATGCAACCTGTGCTTCAAGGGATTCATAGACGCGAATGCGTGGAAACATCACGTTGGGAAACATGACCCGAGTGCTGGTGACGTCGAGTGCCCAGTCTGCAGGTTCAGGTTCCCGACAAAACGAGCACTACAGAAACACGCCACCAACCACGAGAAGAAATACGCATGTAGATCGTGTCCCTACGTCTCCAAAACCACAACCCAAGCAAAGCAGCATCAAAGATGGCATAAAGGAGTTACGTATACGTGTGAATATTGCGACGAAGTCTCTACGAAATGGACATCATACCTTTCGCATGTGCGGATAAAGCATCCGTCGTCGTTCATCTGTTCTGTCTGTGGCTACTCCTTCGTCAGTCAACTAGGGTTAACTATGCACAAAACGATGATGCATAAGGATGTTAACGAAACGGAAAAGGCAGAGTGTAGCGAGGAATCCGGTCCGTACTGCCAGGAGTGCGACGTGAAATTCGTTTCTATGGAGGCGTACAACCGGCATATGGTTACTTCAGTCAAGCATTCACAGAGTGACGattttagTAAAGGCTGCAGAGTCTGCGGAGCCACCTTCTCCAACCCTGAGGAGTTGCGCTTGCACCACAGAAAGGAGCACGCGAGGAAACGACCCAAGAACTATGGCAAGAAGCCAGCGGGGCACTCCTGGCCCGCCAAGTGCGAACACTGCTCCGAAGTGATTCCGAACGCGCGCGAGTACTGGACCCACTTCCGGCGAGTGCACCCGGATAAAAACTACCCCATACAGAAGGATTACGTGTGCGATGTCTGTGGAAAGAGTTTCCGGGGAAACGCGTTCCTTATCTACCACAAGCGCACGCACAGCGCGGAGCGGCAGTACAAGTGCGCGCAGTGCGGCAAGTCCTTCTACAACCGCACCAACCTCAGCATGCATGCGCGCACGCACTCCGACTCGCGCCCCTACCCCTGCGACGTGTGCGCCAAGGCCTTCAAGTGTAAGGGCGCGCTCGACAGGCATTACCGGGTGGAAATGGACACAACCACTGAAGAAGCGGCTCAAGCGGTTGCAATATTGCGACAAGGCCAGAGTCAACGTGAAGTCGCTCGTACTCTGATCATGAGTCAGTCTGCTGTATCTAGAGTTTATCGTCGGTACCAGGAGACTGGTAACTTTCATCGAAGAAGCGGTTCTGGCCGAAGGCGATGCACCTCAGAGAGAGATGACCGATTCATCCAGCCCACCGAACAGCCCGCCTTCGCTTCGCAAGGGAACACGTGGATTGGACGTACGAGCAATGGAGCTCTGTTCTCTTTTCGGATGAAAGCAGAGTGCGTCTACATGGCAGCGATAGAAGAGTACGAGTGTACAGAAGGCCTGGAAAACGCTTTGCACAATACTGCATTCAAGAAAATGTGGCTTTTGGGGGAGGATAATGCCCGCCCAAATACTGCAGTTACCGTTCAGCAGTATCTGCAAGAGGTTGGGATGCGGACTATGGATTGGCCAGCGCGTAGCCCGGACTTAAATCCTATTGAGCATTTGTGGGAAGAACTTAAAAGGAAAGTTCGGACTAGAAATCCAGCACCAGCTACGAAATCTCAACTTAAAGCGGTACTCACCGAAGAATGGGATAGCATTCCCCAAGAATCAAGCCACACCGGAGTGAAGCCGTACGaatgcgaagtgtgcggcaaGGCGTTCGGCCAGTCCAATAGCCGCAAGCTCCACGTGAGGACTGTGCACTTGAAGCAACCAGCCCCCTACGTCAGTCGCACGCGCATCGACAGGAGAAAACTACTGCAGAAAGAACAGAATACAACACATATATTTGTGTATCCTAATTTATCCTAG
Protein Sequence
MNIFLSEENTVKVCRVCLIRDVKMYDLQSYPLETYFEAIIGIPVMSTMDIPPYLCYECASLVKKFSIFRERCLTGQATLYGILQSSGKVTDKEINKIDRQLSRLSSKLSIHIEENIFYAEEGTLLRIVKEEPTTPDDYEVQFKEEEELSVPDIHSSDDEPLSVHKVVKEKKKRGRKRKELVEEDLEESKNDLDISKFVEDELKLQDIFGQPDIEETEGQIKTEGAKRKRGRPRKAVSRAEPAKSRRTKNTGGVHVEDIDLDEFVSVVKLTLEEQMEEIRKRKESLNYQNAAFQCNLCFKGFIDANAWKHHVGKHDPSAGDVECPVCRFRFPTKRALQKHATNHEKKYACRSCPYVSKTTTQAKQHQRWHKGVTYTCEYCDEVSTKWTSYLSHVRIKHPSSFICSVCGYSFVSQLGLTMHKTMMHKDVNETEKAECSEESGPYCQECDVKFVSMEAYNRHMVTSVKHSQSDDFSKGCRVCGATFSNPEELRLHHRKEHARKRPKNYGKKPAGHSWPAKCEHCSEVIPNAREYWTHFRRVHPDKNYPIQKDYVCDVCGKSFRGNAFLIYHKRTHSAERQYKCAQCGKSFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRVEMDTTTEEAAQAVAILRQGQSQREVARTLIMSQSAVSRVYRRYQETGNFHRRSGSGRRRCTSERDDRFIQPTEQPAFASQGNTWIGRTSNGALFSFRMKAECVYMAAIEEYECTEGLENALHNTAFKKMWLLGEDNARPNTAVTVQQYLQEVGMRTMDWPARSPDLNPIEHLWEELKRKVRTRNPAPATKSQLKAVLTEEWDSIPQESSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRTRIDRRKLLQKEQNTTHIFVYPNLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-