Coce013268.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776256.1:2269459-2279210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.67 47 5.4 0.1 3 23 110 130 108 130 0.96 2 19 0.00031 0.021 15.9 0.3 2 23 134 156 133 156 0.93 3 19 0.067 4.7 8.6 0.3 3 23 410 431 408 431 0.95 4 19 0.012 0.84 10.9 0.1 1 19 439 457 439 460 0.94 5 19 0.032 2.2 9.6 0.3 2 23 470 491 469 491 0.95 6 19 4.1 2.8e+02 3.0 1.5 1 23 507 530 507 534 0.81 7 19 0.034 2.3 9.5 3.0 1 23 539 562 539 562 0.97 8 19 1.5 1e+02 4.3 1.1 8 23 614 630 611 630 0.93 9 19 0.037 2.6 9.4 1.8 1 23 639 662 639 662 0.83 10 19 0.45 31 6.0 0.6 1 23 667 690 667 690 0.93 11 19 9.4e-05 0.0065 17.6 3.1 1 23 696 718 696 718 0.98 12 19 4.3e-06 0.0003 21.8 1.7 1 23 725 747 725 747 0.98 13 19 4.7e-05 0.0032 18.5 1.4 1 23 752 774 752 774 0.96 14 19 0.0033 0.23 12.7 1.8 1 23 780 802 780 802 0.95 15 19 2.1e-06 0.00015 22.7 1.6 1 23 808 830 808 830 0.98 16 19 4.7e-05 0.0032 18.5 3.0 2 23 837 860 837 860 0.96 17 19 0.0021 0.15 13.3 0.6 2 23 870 892 869 892 0.96 18 19 0.028 1.9 9.8 0.7 1 23 897 919 897 919 0.95 19 19 0.0012 0.083 14.1 2.7 1 23 925 948 925 948 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCAGACGATTCAGATGATGAACCACTATCAGTATTGGCATCGAAAAAGAAAACGGATTATGAAGTGGAAATCTTCCCCATCTGTGACAGCAGAACACGTAAGAAGAAACCGTTCTCAACAAAAAAGGCCTGCGACGTAACGATAGAACTACAATACAGGGATGAGCTGTCATCTGTTACTGTGGAGAGGCCGACAGATGTTTGGCTGTACCTAAAAGACTTAAACCCAAATGGGCCGTACAGTTGCTTACTCTGTTCAGAATGgttcataaataaaactaaaatagtaATCCACTACGTCGTCAATCACAAAAAAGATTTTTGTGGCATATGCAGATATTTTGTGCCTGATAGAGAAGCGTGGCAAGCCCATTTAAAGTTCCATATACCTTGGCAATGCTCACAATGCCCCAAAACATTTAATAATGAAGCTCTTCTGCGTTCCCACTTCAGTGTCGAGCACCAACTGGTCCACTGCCGGCTTTGCTACACTCGCCTTCCTGATGGCAACGACTATCACACACATCTGTACCAAAAACACAGTGTCACTAATATATCATGTAAAAATGAGGAATGTTTTTGGGAATTCGAGCAGGAAGATTTCATGTTTCTTTGTATACTCTGCTCTAAATCCAATAACGCTATACAGACTTTTTCCAACCATTACATGGCATACCATCATTTGACCCTGAAATGTTTAGCTCCTCTGATCTCAGGAAAAAACTGGAACTTCCCAGTTCATGGAGCTGAGGTGAGCATAGATTTTATTGAGCGGCAGCTCAAAGCCTATGACAAGTATGGATATCTAGACTTGGATAAAAAGCCAGATCGACTGGTGGAGAAAGATGAAAGTGTGTCCCTACTCAAAGTGATGGCTCACGAGTTTCAGCCTGGGGTAATGAAAGAAGAAGTCATGAGTGAACCTGATGAAGGAAccgctgatgatgatgatggagcAGCTGATGGTGATGTAGATAAAAAGAATTTTGAGCCAGAACCTGAAACAACAGACTGCAACCCTAAGATAGACCAAGacgaatttttaaaaacatacaaaGGAGACGAGGATTGTGATACAACTCAAGTTGAGATGAttatgttacaaaaatgttactttgatTATATTGAAGGcacattgaataaaattaactcGCACATCATGCCTCAGACTTCAGCGATCAAGTATGGATTAGCTGATGCTAATCATCCTGCCTACATCAACTGCGAGTTATGTAAAACCAATTTCATAACACTTAATCCATTCATACAACATATGATAAAAATGCATGGTTTTAAATGTGTGTCTACGTTTTCATGCCGAGTCTGTGCTACGACCTTTGACAGCAACTCTGAGCTGGAGCAGCATGAGATCCAGGAAATGGGAGAATTTGAGGATCTGTGGATCTGCCAGTTTTGCGAGAAAGAGTTTGATAACCGAGGGTCGACAAGAATTCACTTGAATGAGCACTGGGATGCTATAGAATATGATAATTGCTTTAGCCCTCATTTGGGGTTCAAGTGTAAATACTGTCCAACTTTGTTTTGGAATGAAACTGATAGAGAGAGCCATCTTGTAAGAGTACATTTCCAGAAGCATATTGAGGATTACTACAGGTGTGAATGCTGTGATGTGGTGTTCAGTGAtaagGTTTGGTTTATCCACCATTACTTAACCAATCACATGGTAAAAGGACAAGAACTGATTGGTTCATACCTACTGAAATGCTGCTTTTGCTGCACAGTGTTACAAAATGTGGATGAGATGAGAAATCACTTCAATGCTAAACATCCTGAGGCACAGAGGGTCTTCTGTTCTGTAGATCCCTGTAAATACAAACCTTTCACTAATAGAAAATCATTCAATTTACATCTGAAGTCGTTCCACGTGAATAAAAAACGCGCTGAGATGTATGCGTGTCAGTACTGTGGCAAGGAGTTCAACAATCGGCGGGCGTGCAGCGCGCACACGACGCAAGCGCACGGGCCCGGCAGGTTCTCCTGCAACATTTGTAAGGAGGCCCTGCATACCGCCGACGAGAGGAAAATCCACTATCTTCTATTGCATCCAGGCCGGCATCCGTTCCAATGCAGAGACTGTGACAAATCCTTTCAATACAAGTCGTCCCTTTACCTACACCGAAAAGAACATGCTCCGAACAAGCAAGACTACAAATGCAGCTACTGCGGGAAGATTTTTAAGAAGCGGGACTCATTCCGAGAACACGTTATGATCCACGAAGGGCCAAAGCACGCCTGTTCGTACTGTCCCATGGTGTTTGTGCAACGTTCCAACATGTTGCGGCATGAGCGACGGCATACGGGGGAACGACCTTACGCATGCCAATACTGTCCCAAGACCTTCTCTGATAAGGGAGCCTGCTCTTCTCATTCCagAATCCATCAAAAGATGCCTGCCTTTCCGTGCATGTATTGCGGACAAACCTTCGTGCAGAAGTCGAAACTGACCTACCATATCAGAAAGCATACTGGAGAAAATCTAGAGACGTGTCCCCACGTGAATTGCGGCAAGATTTTCACGAGTCCATGTTCATTGCGCGAGCATATGAAAACGCATGAGAAAAAACAGATCATGGAACCTGTGAAATGTCCACTTtgctCGAAATCATATCAAGATGAAAAGTACATGATGCGACATCTACGGGCAACACATACAAACGCCGAGTTCCTCTGCCCTCTTTGCAAAAAGAAACTACACAGCGCCGCTTCGCTAAGGGATCATGTCGTCACACACAGTAATGCTAAGGCCTACATGtGCAACCAATGCTCGAAGTCATACAACGTGAAACGCACTATGGTCCGGCACCTGCGGCGCCGTCACGGCCTCAAACACGCGGGAGAAAGCCTCTCAGAGTACTACAGGAAACTCGACCCTAGAGAGTGCAACTTGGGTCTCGACGATGAAACCATGACCAGTATATTCGGACCTCCGAAGAGAAAAATGACCGATGTAGTCAACTTCACAAACATCAATAAAAAGATCAAACTAGACCGGTTGAAGCGCAAGAAGAGTTATAGTGATAATGATAGTGACAATAATGAAATTCCGCAAGCGATTGAAAGAGTGCAAGTTAAGATTGAGTCTCAAGAGTACCAAGAGTCAGAGAATAATGAAGAGTTGCAGCCTACAGATTTTGTGAGTGTTAAGATTGAATGTGCAGAAAATGCTGAAGAAGATGATTATAATAGTGAAGAGGATTAA
- Protein Sequence
- MSSDDSDDEPLSVLASKKKTDYEVEIFPICDSRTRKKKPFSTKKACDVTIELQYRDELSSVTVERPTDVWLYLKDLNPNGPYSCLLCSEWFINKTKIVIHYVVNHKKDFCGICRYFVPDREAWQAHLKFHIPWQCSQCPKTFNNEALLRSHFSVEHQLVHCRLCYTRLPDGNDYHTHLYQKHSVTNISCKNEECFWEFEQEDFMFLCILCSKSNNAIQTFSNHYMAYHHLTLKCLAPLISGKNWNFPVHGAEVSIDFIERQLKAYDKYGYLDLDKKPDRLVEKDESVSLLKVMAHEFQPGVMKEEVMSEPDEGTADDDDGAADGDVDKKNFEPEPETTDCNPKIDQDEFLKTYKGDEDCDTTQVEMIMLQKCYFDYIEGTLNKINSHIMPQTSAIKYGLADANHPAYINCELCKTNFITLNPFIQHMIKMHGFKCVSTFSCRVCATTFDSNSELEQHEIQEMGEFEDLWICQFCEKEFDNRGSTRIHLNEHWDAIEYDNCFSPHLGFKCKYCPTLFWNETDRESHLVRVHFQKHIEDYYRCECCDVVFSDKVWFIHHYLTNHMVKGQELIGSYLLKCCFCCTVLQNVDEMRNHFNAKHPEAQRVFCSVDPCKYKPFTNRKSFNLHLKSFHVNKKRAEMYACQYCGKEFNNRRACSAHTTQAHGPGRFSCNICKEALHTADERKIHYLLLHPGRHPFQCRDCDKSFQYKSSLYLHRKEHAPNKQDYKCSYCGKIFKKRDSFREHVMIHEGPKHACSYCPMVFVQRSNMLRHERRHTGERPYACQYCPKTFSDKGACSSHSRIHQKMPAFPCMYCGQTFVQKSKLTYHIRKHTGENLETCPHVNCGKIFTSPCSLREHMKTHEKKQIMEPVKCPLCSKSYQDEKYMMRHLRATHTNAEFLCPLCKKKLHSAASLRDHVVTHSNAKAYMCNQCSKSYNVKRTMVRHLRRRHGLKHAGESLSEYYRKLDPRECNLGLDDETMTSIFGPPKRKMTDVVNFTNINKKIKLDRLKRKKSYSDNDSDNNEIPQAIERVQVKIESQEYQESENNEELQPTDFVSVKIECAENAEEDDYNSEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119849;
- 90% Identity
- -
- 80% Identity
- -