Coce025971.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776273.1:2809688-2817644[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 86 4.6 4.6 2 23 176 197 175 197 0.96 2 14 0.00047 0.033 15.3 1.8 1 23 203 226 203 226 0.94 3 14 0.00084 0.058 14.6 1.2 1 23 230 252 230 252 0.98 4 14 0.049 3.4 9.0 6.8 2 23 259 281 258 281 0.96 5 14 4.4 3.1e+02 2.8 1.5 1 9 286 294 286 309 0.84 6 14 2.3e-07 1.6e-05 25.8 1.5 1 23 316 339 316 339 0.96 7 14 1.4e-05 0.00097 20.2 1.3 1 23 345 367 345 367 0.96 8 14 6.5e-05 0.0045 18.1 4.3 1 23 373 395 373 395 0.98 9 14 6.9e-07 4.8e-05 24.3 1.3 1 23 401 423 401 423 0.98 10 14 1.3e-05 0.00088 20.3 0.2 1 23 431 453 431 453 0.96 11 14 3.3e-05 0.0023 19.0 0.3 1 23 472 494 472 494 0.98 12 14 0.0096 0.66 11.2 1.2 2 23 501 522 500 522 0.93 13 14 0.42 29 6.1 0.4 1 23 528 551 528 551 0.90 14 14 1.4e-06 0.0001 23.3 1.3 1 23 557 580 557 580 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAGACAGTAGCAGTACTCAACAGAGGAATAAAACACAATTTCTGTACAACCACTGTACAAATCTACAGTTCCAAAGAAGAAAGTAAAGCGATTCTAAAGAAAGAACAAGATGAATTTACTAAAGAAGAAAATTCACTCGTCTCGGAGATAGCTAAGCCGGAGTCTGTATGCTACATATGTCATTGTCAGCTAATGAAATGTCGTAAATTCATCAACAGATCGAGGAAGTCTGAAAATATCCTAACTGAGTTGTTCCGCAACGGCATACAGctaaCTCAAGAAgcaattaaaattatcaacAGTCGGATAAAATCCAATCTTGTGATGTCACCTGTAGCGTTATTGTCTCACTGTTGTCACGGAGATATTTGTAAAGAAAATTTGAAACAAGATAAAGATATGAATACTAAAAGTTTGGAATTTGACAATGCAGAAAAAGATGCACTTACACAAAGAGAATCAACTCCCGAACTGTCTGAAGAACAAATGGATGTTGATTGTATAGCATTAGAAGATTCCAGTTGCAAAGTTTGCAGCTTCAAATGCGAAAACACTCGTAAATTTAACGAACACTTGCGTTTGCACGATCCCAACAGAGAGTATGTGTGTGAAATCTGCTCGTATAGATACGCATCATCAAGCCATCTAGTAGCACACAAACACAACGTCCACGGTACTAAATATAAATGCCGTGAATGCAACAAGAAGTTTACGAAAGTAGGACCATATAATATGCATATGCTATTACACACAGGAAAGCCAATattaaaatgtgaaaaatgCAGCCAAATATTCAAAGATAGGCACGCTCAGAAACATCACTATCGCAAGAGGCATCGTGAATTTACCTATAAGTGCAAATACTGTAACACTAAATTACTCTGTCGGCAATATTTGATTGAACATATCTTCAATATCCACGCCCAAAAGTTTCCACACTACATCTGTGATATATGCGGCAAGAAATTTTCCGAGAAAAGCCACCTCAGAAAACATTTAGCTAGAGTCCATTACAAAAAGGAAGTTTTTGATTGTGAGACGTGCGGTAAATCCTTTTCTTCCAAGAATGTATTGAAGCAACATCAGTTTGTACATGCTGTGAAAAAACCTTTTGAATGCAATTACTGTTTCAAAACATACTGTACTAAGCTAAATTTGATGGTGCATATCATGAAGCACACCGGAGAAAGACCGTTTGCTTGCAATGTATGCGATAAAGGTTTCAGAAGCAAATATTTGCTAAAAGAACACACAAGAACCCACACTAAAGGCGTTGTTCAAACATATGCCTGTGATCAATGCGGCAAAATCTTTTCATTGAAGGCTGAACTGAAAATTCATATGTACCAACACAAGAAGATACGCGTAGAAACGCCACATGTTAAGATGCACAAAGGCAAATCACATTTCCCGTGTGAAGGGTGCAAACAAACATTCTCTGAAATAGGCACATTGGCTAAGCATATGAAAAAGCATATCTCGGACAAAACATGGCGTTGTACCTTGTGCGGTAGAGTATTTAAGCGAGGAGCTATGTGCCGACATTATTTGATGGCTCACAAAGGTATAAAGCCGTACAGCTGTAATGTATGCGAAGAGGAGTTTGTAAAAATAGAACAGGCATACTACCATTACTTGAGATCCCATGGCGGCGACATGCCGTATACATGCCGTGTCTGTAATAAATCATATACACGCAACAGTGGTCTGAGAAAACATTACATGATAGCTCATTTCATAaccgataaataa
- Protein Sequence
- MQETVAVLNRGIKHNFCTTTVQIYSSKEESKAILKKEQDEFTKEENSLVSEIAKPESVCYICHCQLMKCRKFINRSRKSENILTELFRNGIQLTQEAIKIINSRIKSNLVMSPVALLSHCCHGDICKENLKQDKDMNTKSLEFDNAEKDALTQRESTPELSEEQMDVDCIALEDSSCKVCSFKCENTRKFNEHLRLHDPNREYVCEICSYRYASSSHLVAHKHNVHGTKYKCRECNKKFTKVGPYNMHMLLHTGKPILKCEKCSQIFKDRHAQKHHYRKRHREFTYKCKYCNTKLLCRQYLIEHIFNIHAQKFPHYICDICGKKFSEKSHLRKHLARVHYKKEVFDCETCGKSFSSKNVLKQHQFVHAVKKPFECNYCFKTYCTKLNLMVHIMKHTGERPFACNVCDKGFRSKYLLKEHTRTHTKGVVQTYACDQCGKIFSLKAELKIHMYQHKKIRVETPHVKMHKGKSHFPCEGCKQTFSEIGTLAKHMKKHISDKTWRCTLCGRVFKRGAMCRHYLMAHKGIKPYSCNVCEEEFVKIEQAYYHYLRSHGGDMPYTCRVCNKSYTRNSGLRKHYMIAHFITDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -